User: sinorenjianyi

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Posts by sinorenjianyi

<prev • 11 results • page 1 of 2 • next >
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Answer: A: Long Range Linkage Disequilibrium Between Snps
... http://analysistools.nci.nih.gov/LDlink/?tab=ldmatrix ...
written 2.6 years ago by sinorenjianyi40
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Is there a parent-child SNP genotyping data available somewhere?
... Hpamap, no https://hapmap.ncbi.nlm.nih.gov/downloads/samples_individuals/relationships_w_pops_121708.txt 1000 Genomes Weird http://www.1000genomes.org/faq/can-i-get-phenotype-gender-and-family-relationship-information-samples/ All the children are in phase 3, phase 1 does not even contain one singl ...
hapmap 1000genomes chb snp chs written 2.6 years ago by sinorenjianyi40
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Answer: A: How to calculate Hudson's Fst at Population and SNP level?
... Try this http://spsmart.cesga.es/ ...
written 2.6 years ago by sinorenjianyi40
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Comment: C: Long Range Linkage Disequilibrium Between Snps
... Is it possible to do the calculation for a subpopulation? Such as CHB? ...
written 2.6 years ago by sinorenjianyi40
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Comment: C: Long Range Linkage Disequilibrium Between Snps
... Is it possible to do the calculation for a subpopulation? Such as CHB? ...
written 2.6 years ago by sinorenjianyi40
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Answer: A: why distance limit for pairwise LD calculation is 500K in SNAP ?
... https://www.broadinstitute.org/mpg/snap/faq.php#whyismaxdistancelimit found the official explanation And there is indeed a database for long range LD http://www.ncbi.nlm.nih.gov/pubmed/19878600 ...
written 2.6 years ago by sinorenjianyi40
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How to download SNP list of 1000 Genome
... If I just want a list of the SNP ID(rsXXX) from 1000 Genome. Is there a better way than downloading the full data and then extract the SNP IDs? ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Downloading is really slow ...
1000 genomes 1kg snp written 2.6 years ago by sinorenjianyi40
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Comment: C: List Of Snps On Illumina Omni 5M Genotyping Array
... This is omni1_quad, an earlier version, the difference is here http://www.illumina.com/Documents/products/datasheets/datasheet_gwas_roadmap.pdf. omni5 is the newest version ...
written 2.6 years ago by sinorenjianyi40
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why distance limit for pairwise LD calculation is 500K in SNAP ?
... https://www.broadinstitute.org/mpg/snap/ldsearchpw.php Do we assume two SNPs further than 500Kbp from each other are in LE? ...
snap snp written 2.6 years ago by sinorenjianyi40
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Comment: C: Downloading Snps Which Failed Hardy-Weinberg From Hapmap Or 1000G Data
... How do you know all the SNPs that fails HWE has been removed? Is there an official doc somewhere? -Thanks ...
written 2.7 years ago by sinorenjianyi40

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Student 2.7 years ago, asked a question with at least 3 up-votes. For Which SNP database for Chinese Han SNP frequency?

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