User: vHelmholtz

gravatar for vHelmholtz
vHelmholtz20
Reputation:
20
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New User
Location:
United States
Last seen:
2 days, 13 hours ago
Joined:
3 years, 11 months ago
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j***********@gmail.com

Posts by vHelmholtz

<prev • 13 results • page 1 of 2 • next >
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Answer: A: 'find_gene_modules' error in the Monocle 3 tutorial
... The code works. There is no error. By mistake, I skipped running the previous code. Sorry for the confusion. ...
written 4 weeks ago by vHelmholtz20
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'find_gene_modules' error in the Monocle 3 tutorial
... Dear all, I have just started the 'Monocle 3' and followed it using the same code and data in the tutorial [here][1]. When I run the code as below, pr_graph_test_res <- graph_test(cds_subset, neighbor_graph="knn", cores=8) pr_deg_ids <- row.names(subset(pr_graph_test_res, morans_I ...
monocle monocle 3 rna-seq single cell written 4 weeks ago by vHelmholtz20
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Comment: C: Seurat integration of two datasets - GSE126783
... Thank you so much, Haci. I have performed the integration analysis by adding your code. May I ask you another question? Could you let me know how to distinguish cells in each group (cntrl or LD) in a dimension reduction plot (UMAP plot) by using "group.by" function? https://satijalab.org/seurat/v ...
written 7 weeks ago by vHelmholtz20
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Seurat integration of two datasets - GSE126783
... Hello, I am following the integrated analysis of the [Seurat tutorial][1] using two datasets ([GSE126783][2]: control vs retinal degeneration). Could you let me know how to make an 'object.list' for the 'FindIntegrationAnchors' function? ## SETUP THE SEURAT OBJECT # Load the PBMC dataset ...
integration seurat written 7 weeks ago by vHelmholtz20
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Comment: C: Error: unexpected '}' in " }" in R codes of Seurat
... Hi Fatima, Thank you for your advice. Your code works very well. for (i in 0:12) { g <- paste("g_marker_", i, sep = "") assign(g, FindConservedMarkers(immune.combined, ident.1 = i, grouping.var = "stim", verbose = FALSE)) #print(g_ma ...
written 7 weeks ago by vHelmholtz20
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Comment: C: Error: unexpected '}' in " }" in R codes of Seurat
... Hi Fatima, Thank you so much for your comments. I add g_marker <- "" before the loop and also got an error as below, which is similar to the result of g_marker <- 0. > g_marker <- "" > for (i in 0:12) { + g_marker[i] <- FindConservedMarkers(immune.combined, ident. ...
written 8 weeks ago by vHelmholtz20
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Comment: C: Error: unexpected '}' in " }" in R codes of Seurat
... Hi Fatima, Thank you for your kind advice. I tried the simpler code and found that it works as expected. However, when I type add g_marker <- 0 before the for loop, g_marker <- 0 for (i in 0:12) { g_marker[i] <- FindConservedMarkers(immune.combined, ident.1 = i, grou ...
written 8 weeks ago by vHelmholtz20
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Answer: A: Error: unexpected '}' in " }" in R codes of Seurat
... Hi Fatima, Thank you for your advice. It gives me 'g_marker not found'. Could you give me any suggestion about this issue? Thanks in advance! > for (i in 0:12) { g_marker[i] <- FindConservedMarkers(immune.combined, ident.1 = i, grouping.var = "stim", verbose = FALSE) ...
written 8 weeks ago by vHelmholtz20
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Error: unexpected '}' in " }" in R codes of Seurat
... Hello, I am practicing R codes in the Seurat tutorials. When I type for (i in 0:12) { g[i].marker <- FindConservedMarkers(immune.combined, ident.1 = i, grouping.var = "stim", verbose = FALSE) } It gives me an error as below. Error: unexpected symbol in: "for ...
R seurat written 8 weeks ago by vHelmholtz20 • updated 8 weeks ago by noorpratap.singh290
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Comment: C: Error in installing Seurat
... Hi Kevin, It works. Thank you so much. I really appreciate it! Joshua ...
written 5 months ago by vHelmholtz20

Latest awards to vHelmholtz

Supporter 5 weeks ago, voted at least 25 times.
Scholar 7 weeks ago, created an answer that has been accepted. For A: Error: unexpected '}' in " }" in R codes of Seurat

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