User: Pilar E.

gravatar for Pilar E.
Pilar E.90
Reputation:
90
Status:
New User
Location:
Groningen, NL
Last seen:
7 years, 4 months ago
Joined:
7 years, 6 months ago
Email:
p******@hotmail.com

Posts by Pilar E.

<prev • 3 results • page 1 of 1 • next >
21
votes
2
answers
3.9k
views
6 follow
2
answers
How To Make A Circular Plot Of Snps And Indels ??
... Hello everybody, I am analysing SNPs and INDELs in several prokaryotic genomes of the same strain. My goal is to compare them with a reference genome . I would like to learn how to plot the SNPs in a circular plot. It means, that in one plot I can have my reference strain (in the inside for exampl ...
indel visualization snp dna written 7.6 years ago by Pilar E.90 • updated 6.0 years ago by Leonor Palmeira3.7k
0
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1
answer
2.5k
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1
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Comment: C: Can´T Find The Snps With Samtools (Only Get Indels)
... Thanks for answering !Here is the BWA : read_fasta -i reference.fasta | mutate_seq -n 5 | indel_seq -i 5 -d 5 | write_fasta -xo mutant.fna read_fasta -i mutant.fna | shred_seq -s 100 -c 50 | add_ident -k SEQ_NAME | write_fasta -xo reads.fna mkdir BWA (for alignment files) bwa index -p BWA/Ecoli refe ...
written 7.6 years ago by Pilar E.90
11
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1
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2.5k
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1
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Can´T Find The Snps With Samtools (Only Get Indels)
... Hello everybody, Could anyone tell me how to get SNPs using SAMtools???. I am learning how to do it but can´t get the SNPs, I only get the Indels. I am working with a mutant I created from an E coli genome (just for practice). The mutant was created with 5 mismatches, 5 insertions and 5 deletions ...
indel alignment samtools snp written 7.6 years ago by Pilar E.90 • updated 8 months ago by Biostar ♦♦ 20

Latest awards to Pilar E.

Appreciated 7.6 years ago, created a post with more than 5 votes. For How To Make A Circular Plot Of Snps And Indels ??
Popular Question 7.6 years ago, created a question with more than 1,000 views. For How To Make A Circular Plot Of Snps And Indels ??
Student 7.6 years ago, asked a question with at least 3 up-votes. For How To Make A Circular Plot Of Snps And Indels ??
Student 7.6 years ago, asked a question with at least 3 up-votes. For Can´T Find The Snps With Samtools (Only Get Indels)

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