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Answer: Answer: lncRNA analysis tutorial
21 months ago by grant.hovhannisyan ★ 2.6k
1
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1
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1.0k
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Answer: Answer: RNAseq (TruSeq stranded total RNA) - Stringtie fr-firststrand??
22 months ago by grant.hovhannisyan ★ 2.6k
2
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0
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1.4k
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Answer: Answer: Courses in RNAseq data
2.5 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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1.1k
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Answer: Answer: How can I bulk download transcript sequences?
2.7 years ago by grant.hovhannisyan ★ 2.6k
1
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0
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4.3k
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Answer: Answer: What is the difference between SNP and a mutation ?
2.8 years ago by grant.hovhannisyan ★ 2.6k
1
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1
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917
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Answer: Answer: Needs recommendation - Variant Call from RNA seq data of tumor-normal pairs.
2.8 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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2.2k
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Answer: Answer: Download and install StringTie
2.9 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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2.5k
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Answer: Answer: RNAseq data analysis of pooled data
3.0 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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1.3k
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Answer: A: RNA seq data analysis
3.8 years ago by grant.hovhannisyan ★ 2.6k
1
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1
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2.7k
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Answer: A: Question regarding journal publications
4.2 years ago by grant.hovhannisyan ★ 2.6k
1
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0
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1.2k
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Answer: A: Compact visualisation of enrichment analysis
4.2 years ago by grant.hovhannisyan ★ 2.6k
1
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0
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1.7k
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Answer: A: Gene Ontology enrichment analysis of biological processes for up- and down-regul
4.3 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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4.5k
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Answer: A: functional enichment with custom gene annotation
4.4 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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2.2k
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Answer: A: Allelic-Specific RNA-Seq pipeline
4.5 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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1.3k
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Answer: A: Heterozygous genome size estimation using k-mer analysis
4.6 years ago by grant.hovhannisyan ★ 2.6k
1
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0
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2.3k
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Answer: A: Genome vs transcriptome alignement in STAR
4.6 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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1.2k
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Answer: A: Is it possible to detect lncRNA in a de novo assembled genome?
4.6 years ago by grant.hovhannisyan ★ 2.6k
3
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2
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3.4k
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Answer: A: Normalization of allele specific counts in RNA-seq
4.7 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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1.3k
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Answer: A: collapseReplicates changes the order of the original dataframe in DESeq2
4.8 years ago by grant.hovhannisyan ★ 2.6k
2
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0
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986
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Answer: A: How to find out human mtDNA genes in d-loop control region for Indian origin onl
4.8 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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12k
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Answer: C: How to order bars in barplot in ggplot?
updated 4.8 years ago by 11k • written 4.8 years ago by ★ 2.6k
1
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1
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1.0k
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Answer: A: Dual rnaseq normalization
5.0 years ago by grant.hovhannisyan ★ 2.6k
0
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3
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18k
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Answer: A: Bwa Mem Have Different Alignment Result When Using Different Threads
5.0 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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5.5k
views
Answer: A: How to combine multiple data files by column names?
updated 5.1 years ago by 10k • written 5.1 years ago by ★ 2.6k
2
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0
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3.8k
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Answer: A: ClusterProfiler fails to find GO terms
5.1 years ago by grant.hovhannisyan ★ 2.6k
2
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0
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22k
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Answer: A: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
5.3 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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3.5k
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Answer: A: Can logCPM in edgeR be used to compare expression of different genes within samp
5.3 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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3.7k
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Answer: A: Do STAR genome index and RSEM reference need to be from same files?
5.4 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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2.1k
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Answer: A: Parsimony score of a NJ tree
5.4 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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1.0k
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Answer: A: Suggestion regarding DESeq design of experiment
5.5 years ago by grant.hovhannisyan ★ 2.6k
2
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1
reply
4.3k
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Answer: A: Number of reads per lane
5.5 years ago by grant.hovhannisyan ★ 2.6k
1
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1
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2.5k
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Answer: A: How many Mio reads are recommended for RNA-sequencing experiments in yeast?
5.5 years ago by grant.hovhannisyan ★ 2.6k
1
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0
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1.9k
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Answer: A: Wrong coordinates of peaks in DiffBind
5.6 years ago by grant.hovhannisyan ★ 2.6k
1
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0
replies
4.4k
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Answer: A: Allele Specific Expression Analysis
5.6 years ago by grant.hovhannisyan ★ 2.6k
2
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0
replies
15k
views
Answer: A: Deseq2 Shrinkage or no?
5.6 years ago by grant.hovhannisyan ★ 2.6k
1
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0
replies
1.3k
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Answer: A: RNA-seq samples along different time points, how to run Stringtie?
5.6 years ago by grant.hovhannisyan ★ 2.6k
5
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1
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2.1k
views
Answer: C: DESEQ2 size factors change when number of samples change in the design
5.6 years ago by grant.hovhannisyan ★ 2.6k
3
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0
replies
13k
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Answer: A: Fst and pairwise Fst
5.6 years ago by grant.hovhannisyan ★ 2.6k
2
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0
replies
2.8k
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Answer: A: how to detect mutation from viral RNA-seq data
5.7 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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1.4k
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Answer: A: Which DE genes should be included in pathway search
5.7 years ago by grant.hovhannisyan ★ 2.6k
1
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0
replies
1.6k
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Answer: A: Create a GTF file from mapped reads
5.7 years ago by grant.hovhannisyan ★ 2.6k
2
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1
reply
8.0k
views
Answer: A: How many reads should I expect for paired end reads when coverage = 30 million?
5.7 years ago by grant.hovhannisyan ★ 2.6k
2
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1
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1.6k
views
Answer: A: Difference in FPKM values of lncRNA when using different annotation files
5.7 years ago by grant.hovhannisyan ★ 2.6k
2
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0
replies
3.4k
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Answer: A: Best cutoff for fold change of microarray data
5.7 years ago by grant.hovhannisyan ★ 2.6k
0
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0
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1.6k
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Answer: A: RNA-seq illumina paired-end data simulation with fold change differences
5.7 years ago by grant.hovhannisyan ★ 2.6k
1
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0
replies
1.4k
views
Answer: A: sratoolkit and download
5.9 years ago by grant.hovhannisyan ★ 2.6k
4
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2
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1.4k
views
Answer: A: Can I determine the machine used for RNA-seq from the .count file extension?
5.9 years ago by grant.hovhannisyan ★ 2.6k
0
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1
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3.1k
views
Answer: A: finding mutations in rna-seq transcriptome
5.9 years ago by grant.hovhannisyan ★ 2.6k
1
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0
replies
1.5k
views
Answer: A: wget and download
5.9 years ago by grant.hovhannisyan ★ 2.6k
2
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0
replies
1.3k
views
Answer: A: Any RNASeq dataset with large number of replicates out there?
6.0 years ago by grant.hovhannisyan ★ 2.6k
82 results • Page 1 of 2
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