User: plumgwodehouse

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Posts by plumgwodehouse

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VarScan2 SCNA detection for non-human organisms
... Hello, Does anybody have experience in using VarScan2 SCNA tool for non-human organisms. The species I am interested in acrocentric, i.e. with only one arm per autosome. What would be workaround when it comes to giving information about the arms file. Thanks, PGW ...
scna non-human varscan2 written 3.6 years ago by plumgwodehouse0
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Comment: C: Visualize VarScan2 Copy Number Aberrations in IGV
... Hi Chris, Two reasons why I am keen on IGV - have loaded other tracks for related analyses and secondly, collaborators who are remote log in and visualize our data in IGV. Thanks, Plum ...
written 3.6 years ago by plumgwodehouse0
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Visualize VarScan2 Copy Number Aberrations in IGV
... Hello, Is there a tool to visualize focal and large scale SCNAs detected using VarScan2? I have multiple samples and would like to see them as adjacent tracks in IGV. The site recommends loading the data using the copy number format, however the [example][1] given is for array data. I am not sure ...
alignment sequence varscan2 tool igv written 3.6 years ago by plumgwodehouse0 • updated 3.6 years ago by genomax75k

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