User: marion.ryan

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marion.ryan20
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3 years, 4 months ago
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m**********@ucd.ie

Posts by marion.ryan

<prev • 7 results • page 1 of 1 • next >
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Comment: A: RS numbers to VCF format -sheep genome
... All done! Thank you so much. Marion ...
written 6 months ago by marion.ryan20
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RS numbers to VCF format -sheep genome
... Hello, I would like to retrieve information in VCF format using a list of RS numbers for Sheep genome, easiest solution possible please!! Marion ...
vcf rs snp written 6 months ago by marion.ryan20
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Comment: A: VCF SNP analysis
... Thanks for the quick answers, I am looking for the best tool with which to navigate and explore the VCF files derived from an RNAseq experiment in order to obtain specific SNPs relating to particular genes and also compare the samples in relation to specific SNPs, so any tips in relation to the best ...
written 15 months ago by marion.ryan20
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VCF SNP analysis
... Hello Any advice on the best (easiest) way to handle VCF files (to find SNPs) i.e. using `R` or `VCFtools` within Linux. Sorry if this is basic but just need to get started. Regards Marion ...
R vcftools snp written 15 months ago by marion.ryan20
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Comment: C: Hisat2 indexing network problem
... That might explain it, I am working from home on a laptop connected via wifi to a remote cluster at work, I might wait to get back in to execute the command again. Thank you! Marion ...
written 17 months ago by marion.ryan20
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Hisat2 indexing network problem
... Hello using Hisat2-build to generate index files for ovine reference genome v4.0, it gets so far and then complains that the software is disrupting the network connection and stops. any suggestions welcome ...
genome rna-seq written 17 months ago by marion.ryan20
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Setting up my design matrix
... I think I am having an issue with my contrast matrix, in terms of comparing concentrate versus grass fed animals (RMA normalised = eset). I get an output of DE genes, but none of them are differently expressed (Adj P value) and the gene list is different from that of a previous and I believe correc ...
R written 3.3 years ago by marion.ryan20 • updated 3.3 years ago by Biostar ♦♦ 20

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Popular Question 17 months ago, created a question with more than 1,000 views. For Setting up my design matrix

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