User: MJS

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MJS0
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Posts by MJS

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Comment: C: How to extract upper/lowercase from fasta to output position and +/-
... Thank you for the help ...
written 20 months ago by MJS0
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Answer: A: How to extract upper/lowercase from fasta to output position and +/-
... Thanks a lot Michael, very elegant solution :) Ahh, you are correct with regards to structuring the FASTA file. I over simplified it a bit too much. In truth it is a multi fasta file with new line inserts for every 60 nt, so your quick fix only works for the first sequence line following >Contig ...
written 20 months ago by MJS0
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How to extract upper/lowercase from fasta to output position and +/-
... I'm looking for help on how to extract uppercase/lowercase information from multi fasta format file. I have been using the 'SNPable regions' method to mask a non-reference genome (http://lh3lh3.users.sourceforge.net/snpable.shtml). Hence, presently I have my information in the following format: ...
lowercase fasta extract uppercase written 20 months ago by MJS0

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