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1
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0
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11k
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Comment: C: cutadapt for trimming reads to specific length
7.5 years ago by Varun Gupta ★ 1.3k
0
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1
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11k
views
Comment: C: cutadapt for trimming reads to specific length
7.5 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
11k
views
Comment: C: cutadapt for trimming reads to specific length
7.5 years ago by Varun Gupta ★ 1.3k
16
votes
37
replies
18k
views
7 follow
extracting the soft clipped seq only from a sam file
sam bam soft clip
updated 7.8 years ago by 20 • written 9.3 years ago by ★ 1.3k
0
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0
replies
2.7k
views
Comment: C: extracting matched part(M) only for the sequence from the CIGAR string
8.1 years ago by Varun Gupta ★ 1.3k
0
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3
replies
2.7k
views
extracting matched part(M) only for the sequence from the CIGAR string
bam
8.1 years ago by Varun Gupta ★ 1.3k
4
votes
7
replies
4.5k
views
sam flag from paired end reads
bam
updated 8.1 years ago by 13k • written 8.1 years ago by ★ 1.3k
0
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1
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4.5k
views
Comment: C: sam flag from paired end reads
8.1 years ago by Varun Gupta ★ 1.3k
0
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1
reply
3.0k
views
Comment: C: bedtools multicov not running
8.1 years ago by Varun Gupta ★ 1.3k
0
votes
2
replies
2.9k
views
Alternative Splice Reads
updated 8.1 years ago by ▴ 160 • written 12.1 years ago by ★ 1.3k
13
votes
13
replies
6.1k
views
7 follow
Making TSS plots for some genes for a particular histone mark
ChIP-Seq TSS
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.3k
14
votes
3
replies
17k
views
Mismatch Option In Bowtie2
bowtie2
written 10.8 years ago by ★ 1.3k
1
vote
1
reply
4.0k
views
How To Make Use Of The Cufflinks Output In Further Analysis
cufflinks
updated 8.3 years ago by 20 • written 11.1 years ago by ★ 1.3k
0
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1
reply
2.8k
views
Removing low quality ends from a fastq file
RNA-Seq trimming
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.3k
0
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0
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6.1k
views
Comment: Comment: Making TSS plots for some genes for a particular histone mark
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.3k
0
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1
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4.2k
views
Comment: Comment: Extracting counts from RNA-Seq: trouble with bedtools + multicov
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.3k
0
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0
replies
2.7k
views
Comment: Comment: Using bowtie with different mismatch options
updated 19 months ago by 43k • written 8.7 years ago by ★ 1.3k
0
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1
reply
6.1k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
8.7 years ago by Varun Gupta ★ 1.3k
0
votes
2
replies
2.7k
views
Using bowtie with different mismatch options
bowtie
updated 18 months ago by 43k • written 8.7 years ago by ★ 1.3k
1
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0
replies
2.2k
views
Answer: Answer: Tools to "bin" DNA methylation reads into different areas of gene structure
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.3k
0
votes
1
reply
27k
views
Comment: Comment: Remove duplicates in fasta file based on ID
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.3k
2
votes
1
reply
27k
views
Comment: Comment: Remove duplicates in fasta file based on ID
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.3k
2
votes
1
reply
27k
views
Answer: Answer: Remove duplicates in fasta file based on ID
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.3k
1
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0
replies
25k
views
Answer: Answer: searching reads with a certain sequence in fastq file
updated 2.3 years ago by 43k • written 9.0 years ago by ★ 1.3k
0
votes
0
replies
4.6k
views
Comment: Comment: How to select two reads to be processed through STAR?
updated 23 months ago by 43k • written 9.0 years ago by ★ 1.3k
0
votes
2
replies
2.7k
views
Mapping Issues with Bowtie2
bowtie2 chimera
updated 22 months ago by 43k • written 9.1 years ago by ★ 1.3k
0
votes
1
reply
19k
views
Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
9.1 years ago by Varun Gupta ★ 1.3k
1
vote
1
reply
1.5k
views
differential splicing for subset of genes
differential-splicing
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.3k
1
vote
1
reply
4.6k
views
Answer: Answer: How to select two reads to be processed through STAR?
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.3k
8
votes
4
replies
5.5k
views
Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Turned Off
tophat2
updated 2.3 years ago by 43k • written 11.2 years ago by ★ 1.3k
2
votes
1
reply
8.0k
views
Answer: C: Calculate percentage of bases covered less than nX in targeted sequencing experi
9.3 years ago by Varun Gupta ★ 1.3k
0
votes
2
replies
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
9.3 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
18k
views
Comment: C: extracting the soft clipped seq only from a sam file
9.3 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
2.6k
views
Comment: C: Bedtools - Errors in coveragedBed
9.3 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
3.4k
views
Comment: Comment: Yeast genome SK1 strain
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.3k
3
votes
2
replies
3.4k
views
Yeast genome SK1 strain
fasta yeast genome
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.3k
1
vote
2
replies
2.4k
views
RNA Seq datasets for different tissues not Poly-A selected
tissues RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 1.3k
0
votes
0
replies
3.0k
views
Comment: Comment: Microarray data analysis for detecting alternative splicing
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 1.3k
3
votes
3
replies
3.0k
views
Microarray data analysis for detecting alternative splicing
microarray alternative splicing
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 1.3k
0
votes
0
replies
7.2k
views
Comment: Comment: parallel fastQC computation
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 1.3k
0
votes
1
reply
6.7k
views
Comment: C: finding copy number variation from bam file.
9.6 years ago by Varun Gupta ★ 1.3k
1
vote
4
replies
6.7k
views
finding copy number variation from bam file.
cnv
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 1.3k
1
vote
0
replies
6.0k
views
bwa mem mismatch option
bwa-mem
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 1.3k
0
votes
1
reply
2.4k
views
Comment: Comment: Capturing clusters having T to C mutation
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.3k
1
vote
6
replies
2.4k
views
Capturing clusters having T to C mutation
mutation bed
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.3k
0
votes
1
reply
2.4k
views
Comment: C: Capturing clusters having T to C mutation
9.7 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
5.0k
views
Comment: Comment: Why Is The Tophat2 Unmapped.Bam File Larger Than The Accepted.Bam File?
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 1.3k
0
votes
0
replies
6.0k
views
Comment: Comment: fastq file on the basis of read length
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 1.3k
3
votes
1
reply
13k
views
Answer: Answer: Converting .sra files to fastq
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 1.3k
2
votes
3
replies
5.5k
views
bowtie1 -m --best --strata options
bowtie
updated 2.5 years ago by 43k • written 9.9 years ago by ★ 1.3k
215 results • Page 2 of 5
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