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Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
3.9 years ago by Anand Rao ▴ 630
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953
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Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
3.9 years ago by Anand Rao ▴ 630
2
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5
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953
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What is acceptable contaminant levels for RNA-Seq mapping?
RNA-Seq decontamination
3.9 years ago by Anand Rao ▴ 630
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2.7k
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Comment: C: Use HHblits to find homologs in multiple species ?
3.9 years ago by Anand Rao ▴ 630
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2.7k
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Comment: C: Use HHblits to find homologs in multiple species ?
3.9 years ago by Anand Rao ▴ 630
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2.6k
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Comment: C: Phylogenetic tree construction from MAFFT aligned large genome dataset ?
4.0 years ago by Anand Rao ▴ 630
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2.6k
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Answer: A: Phylogenetic tree construction from MAFFT aligned large genome dataset ?
4.0 years ago by Anand Rao ▴ 630
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2.7k
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Answer: A: Use HHblits to find homologs in multiple species ?
4.0 years ago by Anand Rao ▴ 630
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0
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749
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Tools for mRNA-Seq time series DGE GCN and other analyses
time-course RNA-Seq time-series
updated 10 months ago by 43k • written 4.0 years ago by ▴ 630
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0
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1.0k
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Answer: C: fastq file sub-sampling during per position quality score graphing
4.0 years ago by Anand Rao ▴ 630
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1.0k
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Comment: C: fastq file sub-sampling during per position quality score graphing
4.0 years ago by Anand Rao ▴ 630
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3
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1.0k
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fastq file sub-sampling during per position quality score graphing
FASTX_Toolkit FastQC
4.0 years ago by Anand Rao ▴ 630
0
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5
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4.6k
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7 follow
map gene gain loss on species tree
gene-tree tree reconciliation species
updated 17 months ago by ▴ 430 • written 8.5 years ago by ▴ 630
5
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0
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6.0k
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Answer: A: rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
4.2 years ago by Anand Rao ▴ 630
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2
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6.1k
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Comment: C: How to score a multiple sequence alignment (MSA)?
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 630
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0
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6.0k
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Comment: C: rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
4.3 years ago by Anand Rao ▴ 630
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0
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3.1k
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Answer: A: Map PDB match coords to Pfam protein domain
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 630
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1
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2.0k
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Comment: C: Ideal sequence % identity for profile construction
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 630
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1
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8.7k
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Comment: C: Determining best MCL inflation factor
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 630
1
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0
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1.9k
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Comment: C: BBmap pipeline output varies across replicated runs
4.4 years ago by Anand Rao ▴ 630
0
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1
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31k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.4 years ago by Anand Rao ▴ 630
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0
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1.9k
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Comment: C: BBmap pipeline output varies across replicated runs
4.4 years ago by Anand Rao ▴ 630
0
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1
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31k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.4 years ago by Anand Rao ▴ 630
6
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10
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1.9k
views
BBmap pipeline output varies across replicated runs
bbmap reproducibility clumpify
4.5 years ago by Anand Rao ▴ 630
1
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2
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1.9k
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Answer: A: BBmap pipeline output varies across replicated runs
4.5 years ago by Anand Rao ▴ 630
0
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0
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1.9k
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Comment: C: BBmap pipeline output varies across replicated runs
4.5 years ago by Anand Rao ▴ 630
2
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1
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3.2k
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Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
4.5 years ago by Anand Rao ▴ 630
0
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1
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1.9k
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Comment: C: BBmap pipeline output varies across replicated runs
4.5 years ago by Anand Rao ▴ 630
0
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1
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1.9k
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Comment: C: BBmap pipeline output varies across replicated runs
4.5 years ago by Anand Rao ▴ 630
0
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0
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3.5k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
4.5 years ago by Anand Rao ▴ 630
1
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1
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3.5k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
4.5 years ago by Anand Rao ▴ 630
10
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8
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3.5k
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STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
STAR RNA-Seq mapping
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 630
0
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0
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3.5k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
4.5 years ago by Anand Rao ▴ 630
2
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0
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774
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Answer: C: List of plant long read genome assemblies
4.6 years ago by Anand Rao ▴ 630
2
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2
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774
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List of plant long read genome assemblies
plant genome long read Assembly
4.6 years ago by Anand Rao ▴ 630
0
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0
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5.0k
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Comment: C: Erorr running HHblits
4.7 years ago by Anand Rao ▴ 630
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0
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5.0k
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Comment: C: Erorr running HHblits
4.7 years ago by Anand Rao ▴ 630
0
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2
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2.2k
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Comment: C: HHpred installation problem
4.8 years ago by Anand Rao ▴ 630
1
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2
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1.4k
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Multiple sequence alignment statistics
MSA statistics
updated 4.8 years ago by 20 • written 4.9 years ago by ▴ 630
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1
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2.5k
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Comment: C: Using row order of one heatmap for a new heatmap
4.8 years ago by Anand Rao ▴ 630
1
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3
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2.5k
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Using row order of one heatmap for a new heatmap
Heatmap R row reorder plot
4.8 years ago by Anand Rao ▴ 630
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0
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1.2k
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Comment: C: How can I perform pairwise comparison of protein secondary structure?
4.8 years ago by Anand Rao ▴ 630
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0
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1.2k
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Comment: C: How can I perform pairwise comparison of protein secondary structure?
4.8 years ago by Anand Rao ▴ 630
1
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8
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1.2k
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How can I perform pairwise comparison of protein secondary structure?
secondary structure protein structure alignment
updated 4.8 years ago by ★ 27k • written 4.8 years ago by ▴ 630
3
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1
reply
1.3k
views
Evaluating protein structure predictions
protein structure evaluation ProQ QMEAN
updated 4.8 years ago by ▴ 390 • written 4.8 years ago by ▴ 630
1
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0
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25k
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Comment: C: HISAT2 V.S. STAR
4.8 years ago by Anand Rao ▴ 630
0
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1
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25k
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Comment: C: HISAT2 V.S. STAR
4.8 years ago by Anand Rao ▴ 630
0
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1
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1.1k
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RepeatModeler contig size filter and parallelization
RepeatModeler Contig length Parallel
5.1 years ago by Anand Rao ▴ 630
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0
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1.1k
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Answer: A: RepeatModeler contig size filter and parallelization
5.1 years ago by Anand Rao ▴ 630
0
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0
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1.5k
views
RepeatModeler run error troubleshooting
RepeatModeler RepeatMasker BuildDatabase blastdb
5.1 years ago by Anand Rao ▴ 630
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