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528
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Comment: Comment: WGBS Analysis with 1 control sample and 6 disease samples
3 days ago by ATpoint 88k
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323
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Answer: Answer: Preranked GSEA permutation
5 days ago by ATpoint 88k
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547
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Comment: Comment: PCA interpretation
7 days ago by ATpoint 88k
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415
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Comment: Comment: Loss of strandedness in the Illumina Strandedness Total RNA protocol
7 days ago by ATpoint 88k
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395
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Answer: Answer: Error when computing bedtools bamtobed -bedpe
11 days ago by ATpoint 88k
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423
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Comment: Comment: Deg Difference in Deseq2
13 days ago by ATpoint 88k
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567
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Comment: Comment: MACS3 Parameter adjustments
18 days ago by ATpoint 88k
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1
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437
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Answer: Answer: Deseq2
18 days ago by ATpoint 88k
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1
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522
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Answer: Answer: Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq wit
19 days ago by ATpoint 88k
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403
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Comment: Comment: Difficulties in calling peaks for CUT&RUN (IgG control with high RPKM value)
20 days ago by ATpoint 88k
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1
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784
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Answer: Answer: FeatureCount : Successfully assigned alignments is low
20 days ago by ATpoint 88k
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497
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Answer: Answer: Bootstrapping in RNA-seq
21 days ago by ATpoint 88k
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883
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Comment: Comment: Is this the correct DESeq2 design for model with interaction terms and batch eff
23 days ago by ATpoint 88k
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308
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Answer: Answer: Clarification of options --keep-dup: all vs. -f FRAG in MACS3
27 days ago by ATpoint 88k
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325
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Answer: Answer: Batch correction in TNBC epithelial cells
28 days ago by ATpoint 88k
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423
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Comment: Comment: How do I generate a Manhattan plot like this?
29 days ago by ATpoint 88k
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459
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Comment: Comment: Signature Matrix Modifications/Subclustering
5 weeks ago by ATpoint 88k
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854
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Comment: Comment: Heatmap for visualizing the differentially expressed genes in RNA-seq data
5 weeks ago by ATpoint 88k
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854
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Comment: Comment: Heatmap for visualizing the differentially expressed genes in RNA-seq data
5 weeks ago by ATpoint 88k
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854
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Answer: Answer: Heatmap for visualizing the differentially expressed genes in RNA-seq data
5 weeks ago by ATpoint 88k
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373
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Comment: Comment: single-cell differential expression of unbalanced cell number
5 weeks ago by ATpoint 88k
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387
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Comment: Comment: IGV view for Chromatin accessibility ATAC-seq
5 weeks ago by ATpoint 88k
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355
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Answer: Answer: Can you compare GETx and TCGA miRNA non normalized counts a
5 weeks ago by ATpoint 88k
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506
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Answer: Answer: ATAC-seq analysis
5 weeks ago by ATpoint 88k
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519
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Comment: Comment: GSEA analysis in R
5 weeks ago by ATpoint 88k
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519
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Answer: Answer: GSEA analysis in R
5 weeks ago by ATpoint 88k
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0
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696
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Answer: Answer: Random seed in scanpy
6 weeks ago by ATpoint 88k
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1
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1.2k
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Comment: Comment: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
6 weeks ago by ATpoint 88k
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1
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492
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Comment: Comment: use AverageExpression to stratify samples
6 weeks ago by ATpoint 88k
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870
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Comment: Comment: Mass-spectrometry proteomics
6 weeks ago by ATpoint 88k
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1.2k
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Comment: Comment: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
6 weeks ago by ATpoint 88k
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1
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1.2k
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Answer: Answer: Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
7 weeks ago by ATpoint 88k
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0
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667
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Comment: Comment: ATACSEQ normlization for bigwig files
7 weeks ago by ATpoint 88k
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0
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667
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Comment: Comment: ATACSEQ normlization for bigwig files
7 weeks ago by ATpoint 88k
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1
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667
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Answer: Answer: ATACSEQ normlization for bigwig files
7 weeks ago by ATpoint 88k
2
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0
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531
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Answer: Answer: Error with bigWigAverageOverBed
7 weeks ago by ATpoint 88k
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515
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Comment: Comment: Correcting Technical Artifacts in Cross-Dataset Pseudobulk Analysis
7 weeks ago by ATpoint 88k
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1
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929
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Comment: Comment: RNAseq meta-analysis to identify “consistently expressed” genes
7 weeks ago by ATpoint 88k
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0
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582
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Comment: Comment: Multi-omic trajectory on CITE-Seq data
7 weeks ago by ATpoint 88k
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1
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582
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Comment: Comment: Multi-omic trajectory on CITE-Seq data
8 weeks ago by ATpoint 88k
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0
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1.1k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
8 weeks ago by ATpoint 88k
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1
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1.6k
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Comment: Comment: STAR aligner problem on local laptop
8 weeks ago by ATpoint 88k
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0
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1.6k
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Comment: Comment: STAR aligner problem on local laptop
8 weeks ago by ATpoint 88k
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1
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1.1k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
8 weeks ago by ATpoint 88k
2
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2
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1.1k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
8 weeks ago by ATpoint 88k
0
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1
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1.1k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
8 weeks ago by ATpoint 88k
3
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1
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559
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Answer: Answer: DESeq2 outliers-should I be concerned?
8 weeks ago by ATpoint 88k
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1
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553
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Comment: Comment: Unexpected negative correlation between gene-length and counts
8 weeks ago by ATpoint 88k
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1.5k
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Comment: Comment: Facing issue with output of nextflow pipeline
8 weeks ago by ATpoint 88k
1
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0
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435
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Answer: Answer: Minimum Number of Cells for Downstream Analysis after subsetting a particular ce
8 weeks ago by ATpoint 88k
10,324 results • Page 1 of 207
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