Moderator: ATpoint

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ATpoint14k
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Posts by ATpoint

<prev • 1,889 results • page 2 of 189 • next >
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Comment: C: Transcription factors which act with CTCF
... I think what you need first is some quality time spent on PubMed (=literature research). ...
written 11 hours ago by ATpoint14k
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Comment: C: Variant Effect Prediction Databases
... SNV, SV? Coding, non-coding? ...
written 1 day ago by ATpoint14k
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Comment: C: Software regarding Structure Activity Relationship
... Please https://www.biostars.org/p/357878/ ...
written 1 day ago by ATpoint14k
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Comment: C: Retrieve many FASTA of the same gene from NCBI..
... Again, this does not answer the toplevel question like in most answers you gave previously. OP is asking how to get a nucleotide sequence, and your answer starts with "paste your query sequence". Why are you doing that? https://www.biostars.org/p/119362/ -- OP asked for the principle of AF calculat ...
written 1 day ago by ATpoint14k
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Comment: C: how to interpret fold change (fc) in ballgown
... You asked that before with a one-liner ( https://www.biostars.org/p/363069/ ). Maybe some more effort will increase your chance of good answers https://www.biostars.org/p/357878/ ...
written 2 days ago by ATpoint14k
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Answer: A: Parallel for bwa mem - problem with -R argument for ID and SM
... For `parallel` jobs it is convenient to wrap the actual job script into a function and use `parallel` to parallelize this function: ## Want to do parallel alignments: function BWAMEM { BASENAME=$1 IDX=$2 bwa mem (options...) -R '@RG\tID:'${BASENAME}'_ID\tSM:'${BASENAM ...
written 2 days ago by ATpoint14k
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Comment: C: Error when split WES data into sub-files
... Hello 948077241! Questions similar to yours can already be found at: How can I split WES FASTQ file into sub-files for each chromosome ? We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply ...
written 2 days ago by ATpoint14k
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Comment: C: Error when split WES data into sub-files
... I will close this thread and add an explanation appended to my answer in the previous thread (this one https://www.biostars.org/p/369483/ ). Please do not open new threads on the identical problem but follow up on the original one. Opening new ones only spreads information over multiple threads and ...
written 2 days ago by ATpoint14k
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Comment: C: MACS2 option for ATAC seq?
... What exactly is the issue with `macs2`, can you post the command you use for it? ...
written 2 days ago by ATpoint14k
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Comment: C: Small data set for data analyis in the own laptop
... `Salmon` is a transcript quantifier. It produces transcriptome abundance estimates. There are typically aggregated to the gene level with tximport (BioC package) followed by differential analysis with `DESeq2` (or any other framework you prefer), see [here][1]. Salmon is not resource-hungry and very ...
written 2 days ago by ATpoint14k

Latest awards to ATpoint

Teacher 3 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 4 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 4 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Appreciated 11 days ago, created a post with more than 5 votes. For Brief Reminder On How To Ask A Good Question
Scholar 17 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Prophet 18 days ago, created a post with more than 20 followers. For Fast download of FASTQ files from the European Nucleotide Archive (ENA)
Teacher 19 days ago, created an answer with at least 3 up-votes. For A: Procedure to use Cutadapt toolkit
Teacher 19 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 19 days ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 24 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 26 days ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 5 weeks ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 6 weeks ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For C: Does BWA mem work with uBAM file?
Scholar 7 weeks ago, created an answer that has been accepted. For C: Does BWA mem work with uBAM file?

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