Moderator: ATpoint

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ATpoint12k
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Posts by ATpoint

<prev • 1,557 results • page 2 of 156 • next >
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Comment: C: How can I get the sequence of 5' and 3' UTR regions of bacterial genome?
... I am not a bacterial expert at all, but conceptually you can check for these UTRs manually. In eukaryotes, the 5'UTR is defined as the sequence from the beginning of exon 1 to the base right upstream of the start codon. Likewise, the 3'UTR is the base right downstream after the stop codon until the ...
written 1 day ago by ATpoint12k
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Comment: C: Reference genome of Wheat (triticum aestivum)
... Hello hirahameed222! Questions similar to yours can already be found at: - [Reference genome for wheat/ Triticum aestivum][1] We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply below. We'll be happy to tal ...
written 1 day ago by ATpoint12k • updated 1 day ago by RamRS20k
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Comment: C: Values in the data.frame are negative by RMA normalization, how deseq2 package w
... Please use the formatting bar with the code option (`10101`) to highlight code and structure your question. ...
written 1 day ago by ATpoint12k
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Comment: C: how to install Juicer hi-c
... Follow the Wiki which is even linked on the page you linked. ...
written 1 day ago by ATpoint12k
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Comment: C: Cheapest Microarray ($ per sample) Currently Available 2019
... Hello naiem.issa! We believe that this post does not fit the main topic of this site. Not bioinformatics-related. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply ...
written 1 day ago by ATpoint12k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
... For a nice explanation, also see [StatQuest][1] [1]: https://statquest.org/2015/07/09/rpkm-fpkm-and-tpm-clearly-explained/ ...
written 1 day ago by ATpoint12k
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Comment: C: RNA-Seq time series analysis using a DESeq2 spline approach yields far too many
... https://www.biostars.org/u/30241/, as this is quiet a statistics-heavy and specific question, I think you should also post this at the [Bioconductor][1] support page (but indicate the cross-post). Many of the DEG software developers are active there and outstandingly responsive. [1]: https://sup ...
written 2 days ago by ATpoint12k
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Comment: C: how to get correlation between the counts over each gene at the same timepoint (
... Do I understand correctly that you aim to calculate 58000 correlation coefficients? ...
written 2 days ago by ATpoint12k
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Comment: C: how to get correlation between the counts over each gene at the same timepoint (
... Check out the `cor` function in R. Different kinds of correlation measures are available, including Spearman and Pearson. ...
written 2 days ago by ATpoint12k
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Comment: C: Creating a web platform for a Linux based script
... Hello chagross! We believe that this post does not fit the main topic of this site. Not a bioinformatics-related question. Please consider posting on StackExchange. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help wi ...
written 2 days ago by ATpoint12k

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