User: srx3001

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srx30010
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Posts by srx3001

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hmmsearch to show all sequences
... Hello all, I am using hmmsearch to go over a small database of peptides (basically just a multifasta file) to search with certain hmmprofile's. Now that is all working great, but since I am visualizing the data using plots - like an hmm score for each hit compared to function of the peptide I need ...
multifasta hmmsearch hmmer written 17 months ago by srx30010
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VCF +PDB for protein structure prediction
... Hello! I have a set of PDB files for small proteins as well as ~600 VCF (mostly SNPs and short indels) files of the members of the same species with certain mutations. I am looking for a tool that can check the effect of mutations on the protein structure. For example if there is a helix or a stra ...
vcf protein structure structure prediction snp written 19 months ago by srx30010

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