User: jleandroj

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jleandroj0
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Posts by jleandroj

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Locating A Sequence In A Fasta File.
... Hi Anima, What does `"Enter the subject:\n"` means? Thanks ...
written 2.4 years ago by jleandroj0 • updated 14 months ago by Ram32k
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DNA sequences from the origins of replication.
... Hi, DNA replication is initiated from specific sequences called origins of replication. I would like to know if there is a database or an article/paper that shows the different or the only DNA sequence of the origins of replication in humans. I am looking for the DNA sequences of the origins of rep ...
genome sequence written 2.4 years ago by jleandroj0 • updated 2.4 years ago by toralmanvar910
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Comment: A: error in count reads by exons
... Thanks Wouter De coster and thanks genomax2 I selected in the ucsc in outformat: selected fields from primary tables and related tables and that is the reason because I was wrong when I downloaded the table. Sorry. ...
written 4.4 years ago by jleandroj0
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error in count reads by exons
... Hi I followed this tutorial to counts reads by exons. http://bedtools.readthedocs.io/en/latest/content/tools/multicov.html After running the script, I got this error "Unexpected file format. Please use tab-delimited BED, GFF, or VCF. Perhaps you have non-integer starts or ends at line 2?" I am ...
software error written 4.4 years ago by jleandroj0
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Comment: C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
... Hi David. Thanks so much for helping us. I tried to run this command But I did get results. I believe that the problem is the bed file. I would to know what the next columns I need to include to get my table in ucsc and then my genes.bed name Name of gene chrom Reference sequence chromosome or ...
written 4.4 years ago by jleandroj0
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(Closed) Combine or merge vcf files in galaxy.
... Hi I would like to know Sets merged within FBayes in galaxy of many vcf files or combine or merge with others tools in galaxy. Thanks. ...
snp written 4.6 years ago by jleandroj0
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Comment: C: MAPQ in psl file
... Thanks for helping me. Yes, it seems be that there is not equivalent but in other forums. people suggested to take a look in the first column. Moreover, some professors said that matches( first column of psl file) is the closest parameter to quality in this file. ...
written 4.6 years ago by jleandroj0
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Comment: C: MAPQ in psl file
... yes, it is. I did with pblat. ...
written 4.6 years ago by jleandroj0
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MAPQ in psl file
... In a sam file I have MAPQ (mapping quality) for each read. Is there an equivalent or similar to MAPQ in a psl file? if not, what can measure I can use to select the best quality of reads in a psl file. I am trying to do it without samtools (using only awk or grep). ...
sequence written 4.6 years ago by jleandroj0
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Comment: C: How can I select reads Based on the best MAPQ and exclude reads with the same na
... Thanks Devon Can I do it in shell (awk, perl)? Are there any way to do it using samtools? ...
written 4.6 years ago by jleandroj0

Latest awards to jleandroj

Popular Question 2.4 years ago, created a question with more than 1,000 views. For MAPQ in psl file
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Combine or merge vcf files in galaxy.

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