User: ASid

gravatar for ASid
ASid10
Reputation:
10
Status:
New User
Location:
USA
Last seen:
1 month, 1 week ago
Joined:
4 years, 7 months ago
Email:
a***********@gmail.com

I am a Systems Biologist. My work is mainly on modelling and analysis of biological systems.My intrests are in using  Formal verification and Machine Learning based methods for  analysing biological networks. 

Posts by ASid

<prev • 24 results • page 1 of 3 • next >
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Comment: C: GSEA Preranked Query
... So here's the thing-- 1- I did not prefiltered my data with low expressing genes- 2- I have two types of vaccines response data --one for pneumococcal vaccines where I have 11 serotypes and influenza vaccines where I have 03 serotypes at min. For pneumococcal vaccines data I have mostly good respon ...
written 7 weeks ago by ASid10
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Comment: C: GSEA Preranked Query
... Two reasons: 1: I want to identify the genes that could predict the antibody response later in the analysis. 2: I saw people approaching this problem in this way in cell and nature papers It would be a previlelige to get an answer from you on this if am not thinking correctly through it as I see y ...
written 7 weeks ago by ASid10
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Comment: A: GSEA Preranked Query
... Two reasons: 1: I want to identify the genes that could predict the antibody response later in the analysis. 2: I saw people approaching this problem in this way in cell and nature papers ...
written 7 weeks ago by ASid10
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GSEA Preranked Query
... I have RNA seq Data (n=15) paired with antibody response data(n=15) at day 10. The question that I want to ask is that which genes sets/pathways get most pertuebed at day 10 in repose to vaccination. I get my spearman correlation values between each genes and antibody response at day 10. I wanted ...
geapreranked gsea written 7 weeks ago by ASid10 • updated 1 day ago by Biostar ♦♦ 20
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Comment: C: Differential expression analysis of few genes from rnaseq or microarray
... yes my question is exactly this!whether to use adjusted p-values or not? I already agree with you on this and want to know that my above observation and explanation is correct regarding limma taking into account all gene variances to come up with statistical values and thus picking the the p values ...
written 12 months ago by ASid10
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Comment: C: Differential expression analysis of few genes from rnaseq or microarray
... Yeah so further analysis is nothing more than that these statistics are coherent with the hypothesis they were testing coming up as significant for related metabolites modulated by related genes(coming from microarray) of similar comparisons performed separately and we are gona see them in plots! ...
written 12 months ago by ASid10
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Differential expression analysis of few genes from rnaseq or microarray
... So,there is a project I am working on with somebody for analyzing deferentially expressed genes from couple of array/RNA seq data sets. Seems like people are interested in only checking up the expression profile of only two genes among different comparison groups in all of the data sets. Just to be ...
microarray differentially expresses genes rna-seq written 12 months ago by ASid10
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Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... got it thanks!you saved a lot of time. Appreciate it. ...
written 13 months ago by ASid10
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Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... Kevin does this targets file happens to be the pdata? phenotype data associated with arrays?I appreciate your response. ...
written 13 months ago by ASid10
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Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... Thank you very much Kevin for the support which is a blessing right now. I have one other question related to this I did the first part of combining as you said but for the next part I can find the .bgx file in the raw tar folder but not this targets file which I need to convert into targetinfo. Can ...
written 13 months ago by ASid10

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