User: amnahsiddiqa

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Posts by amnahsiddiqa

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Correlation test for multiple variables and adjusted p values
... ok thank you.but i am telling this 500 genes number juat as an example. my actual data is much larger. its for 20k genes. in that case what do you suggest! ...
written 4 weeks ago by amnahsiddiqa0
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Correlation test for multiple variables and adjusted p values
... So I am performing correlation test (pearson) on 500 genes data. I want to check the associations between every pair of gene and in turn getting the r value and p value for each of them of course. In total we get 500 * 499/2 = 124750 tests/gene pairs to compare. I know next step is to perform multi ...
correlation gene to gene associations written 4 weeks ago by amnahsiddiqa0 • updated 4 weeks ago by Nicolas Rosewick8.0k
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(Closed) Combine multiple hard drives into one big volume in linux
... I am just a very basic level programmer and not a system administrator. And I have to set up a linux box in which there are three hard drives (8TB, 8TB and 4TB). I have to combine them all appear as one. I had no clue about that how to do it. I have installed ubuntu desktop 18.0.4 on it. I have no i ...
software error written 3 months ago by amnahsiddiqa0
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rna seq single ended -Information on Rseqc report
... I am newbie for ngs data analysis and so my questions would be very naive. With a lot of struugle I could use infer_experiment.py of rseqc to infer the stranded ness of the single ended publicly availaible dataset data that I was using. The output is displayed as follows: This is SingleEnd Dat ...
standedness rna seq rseqc written 6 months ago by amnahsiddiqa0 • updated 6 months ago by lshepard360
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RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq files available in public data repositories such as SRA?
... How To Find RNA-seq data is Strand-Specific or not based on only fastq files from information available in public databases. I am looking for information because I might not know if such information is also deposited in public repositories. Right now I am interested in knowing this information abou ...
rna-seq written 7 months ago by amnahsiddiqa0 • updated 7 months ago by swbarnes26.2k
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Comment: C: RNA seq stranded
... Ok caggtaagtat. I got it. I have already read this paper but I still have the confusions. I have another question then. When we get one of the strands (with uracil which is complementary to mRNA) removed/digested. We have the other strand left. And when they say in sequencing protocol that we will a ...
written 7 months ago by amnahsiddiqa0
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Comment: A: RNA seq stranded
... Ok caggtaagtat. I got it. I have another question then. When we get one of the strands (with uracil which is complementary to mRNA) removed/digested. We have the other strand left. And when they say in sequencing protocol that we will amplify it and sequence it I understand that the amplification (c ...
written 7 months ago by amnahsiddiqa0
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RNA seq stranded
... HI everybody. I am trying to understand a concept in RNA seq analysis if somebody could help. As far as i understand, in a stranded method (as in illumina true seq) first cDNA strand is sequenced in the dUTP method which is a reverse complement of sense strand/mRNA/coding strand. But I dont get one ...
rna-seq written 7 months ago by amnahsiddiqa0
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WGCNA export network into cytoscape : problem
... The threshold (which corresponds to adjacency threshold for including edges in the output.) in the function “exportNetworkToCytoscape” (WGCNA) affects the results in which manner? I wanted to export the network of 461 module size into cutoscape network format and it gave me the 447 nodes in the res ...
R network export cytoscape wgcna written 2.2 years ago by amnahsiddiqa0 • updated 2.2 years ago by WouterDeCoster40k
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Comment: C: Illumina microarray dataset analysis
... Alright I will try that and posy back if it works. Thak you ...
written 3.2 years ago by amnahsiddiqa0

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