User: ASid

gravatar for ASid
ASid10
Reputation:
10
Status:
New User
Location:
USA
Last seen:
7 months, 2 weeks ago
Joined:
4 years, 2 months ago
Email:
a***********@gmail.com

I am a Systems Biologist. My work is mainly on modelling and analysis of biological systems.My intrests are in using  Formal verification and Machine Learning based methods for  analysing biological networks. 

Posts by ASid

<prev • 20 results • page 1 of 2 • next >
0
votes
1
answer
249
views
1
answers
Comment: C: Differential expression analysis of few genes from rnaseq or microarray
... yes my question is exactly this!whether to use adjusted p-values or not? I already agree with you on this and want to know that my above observation and explanation is correct regarding limma taking into account all gene variances to come up with statistical values and thus picking the the p values ...
written 7 months ago by ASid10
0
votes
1
answer
249
views
1
answers
Comment: C: Differential expression analysis of few genes from rnaseq or microarray
... Yeah so further analysis is nothing more than that these statistics are coherent with the hypothesis they were testing coming up as significant for related metabolites modulated by related genes(coming from microarray) of similar comparisons performed separately and we are gona see them in plots! ...
written 7 months ago by ASid10
4
votes
1
answer
249
views
1
answer
Differential expression analysis of few genes from rnaseq or microarray
... So,there is a project I am working on with somebody for analyzing deferentially expressed genes from couple of array/RNA seq data sets. Seems like people are interested in only checking up the expression profile of only two genes among different comparison groups in all of the data sets. Just to be ...
microarray differentially expresses genes rna-seq written 7 months ago by ASid10
1
vote
1
answer
612
views
1
answers
Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... got it thanks!you saved a lot of time. Appreciate it. ...
written 9 months ago by ASid10
0
votes
1
answer
612
views
1
answers
Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... Kevin does this targets file happens to be the pdata? phenotype data associated with arrays?I appreciate your response. ...
written 9 months ago by ASid10
0
votes
1
answer
612
views
1
answers
Comment: C: illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... Thank you very much Kevin for the support which is a blessing right now. I have one other question related to this I did the first part of combining as you said but for the next part I can find the .bgx file in the raw tar folder but not this targets file which I need to convert into targetinfo. Can ...
written 9 months ago by ASid10
1
vote
1
answer
612
views
1
answer
illumina Arrays Illumina HumanHT-12 V3.0 expression beadchip reading data
... Hi All So I have this GEO illumina data that i need to analyze with GEO ID GSE19435. This is a Illumina HumanHT-12 V3.0 expression beadchip . I want to analyze the non normalized data which is usually provided as non_normalized separate series file with this name for example you can find one in ...
illumina microarray written 9 months ago by ASid10 • updated 9 months ago by Kevin Blighe61k
0
votes
2
answers
315
views
2
answers
Comment: C: Correlation test for multiple variables and adjusted p values
... ok thank you.but i am telling this 500 genes number juat as an example. my actual data is much larger. its for 20k genes. in that case what do you suggest! ...
written 11 months ago by ASid10
2
votes
2
answers
315
views
2
answers
Correlation test for multiple variables and adjusted p values
... So I am performing correlation test (pearson) on 500 genes data. I want to check the associations between every pair of gene and in turn getting the r value and p value for each of them of course. In total we get 500 * 499/2 = 124750 tests/gene pairs to compare. I know next step is to perform multi ...
correlation gene to gene associations written 11 months ago by ASid10 • updated 11 months ago by Nicolas Rosewick8.8k
0
votes
0
answers
449
views
0
answers
(Closed) Combine multiple hard drives into one big volume in linux
... I am just a very basic level programmer and not a system administrator. And I have to set up a linux box in which there are three hard drives (8TB, 8TB and 4TB). I have to combine them all appear as one. I had no clue about that how to do it. I have installed ubuntu desktop 18.0.4 on it. I have no i ...
software error written 14 months ago by ASid10

Latest awards to ASid


Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1218 users visited in the last hour