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Posts by jenkelly
Comment: C: Cuffmerge BAM error
... Sorry I should have also posted the command I used: cuffmerge -p 16 -o cufflinks_frsecondstrand/cuffmerge/trout_cuffmerge -g ref_genomes/Oncorhynchus_mykiss_chr_annot_rename_sort.gtf -s ref_genomes/bowtie_index/rainbow_trout.fa cufflinks_frsecondstrand/cuffmerge/trout_gft_list.txt As you can see t ...
... Dear forum I have run cuffmerge on multiple gtf files generated by cufflinks. I am getting the following error: [bam_header_read] EOF marker is absent. The input is probably truncated. [bam_header_read] invalid BAM binary header (this is not a BAM file). File cufflinks_frsec ...
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