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5
votes
4
replies
6.9k
views
Trouble installing cd-hit
cd-hit
updated 2.3 years ago by ▴ 10 • written 7.4 years ago by ▴ 140
0
votes
2
replies
734
views
Plot assigned / unassigned reads distance to 3'UTR
bedtools RNA-seq closest
2.7 years ago by nlehmann ▴ 140
0
votes
1
reply
821
views
How to interpret a single cell RNA-seq experiment with 10 times less cells but correct number of reads ?
single-cell 10xGenomics cellranger
3.3 years ago by nlehmann ▴ 140
0
votes
2
replies
1.3k
views
IGV create genome: cytoband not working
IGV RNA-Seq
updated 3.5 years ago by • 0 • written 4.6 years ago by ▴ 140
4
votes
7
replies
2.0k
views
Detect discrepancies in GFF files
RNA-Seq Gffread AGAT UCSC
updated 3.8 years ago by 20 • written 3.9 years ago by ▴ 140
2
votes
7
replies
2.4k
views
Is there a way to change gene_id in a GTF file where gene_id is actually a gene_name (and multiple genes have the same gene names) ?
RNA-Seq assembly UCSC
3.9 years ago by nlehmann ▴ 140
0
votes
2
replies
992
views
Comparisons of genes coordinates
gene RNA-Seq
3.9 years ago by nlehmann ▴ 140
4
votes
5
replies
2.4k
views
UCSC track hub: how to best include a GTF / GFF file
UCSC trackhub annotation
updated 3.9 years ago by ▴ 650 • written 3.9 years ago by ▴ 140
1
vote
0
replies
1.2k
views
RSeQC infer_experiment output interpretation to infer library type fr-firstand or fr-secondstrand
RNA-Seq RSeQC annotation
3.9 years ago by nlehmann ▴ 140
0
votes
5
replies
1.3k
views
RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
RNA-Seq Nanopore Illumina assembly
updated 4.0 years ago by 6.4k • written 4.0 years ago by ▴ 140
1
vote
1
reply
1.4k
views
Loading GTF with GenomicFeatures makeTxDb gives an empty TxDb object
gffcompare genomicfeatures maketxdb RNA-Seq
4.0 years ago by nlehmann ▴ 140
0
votes
2
replies
1.5k
views
How to recover 5'UTR, CDS, start codon after GTF merging ?
gffcompare cuffmerge stringtie annotation gtf
4.1 years ago by nlehmann ▴ 140
0
votes
3
replies
2.1k
views
Stringtie2: how to interpret conflicts between results
RNA-Seq long-reads de novo annotation stringtie
updated 4.2 years ago by 87k • written 4.2 years ago by ▴ 140
5
votes
2
replies
1.2k
views
Difference between UCSC annotation files
UCSC assembly
updated 4.2 years ago by ▴ 130 • written 4.2 years ago by ▴ 140
0
votes
0
replies
1.7k
views
Steps for molecular docking of antibodies / antigens
docking immunology
7.3 years ago by nlehmann ▴ 140
1
vote
5
replies
3.9k
views
Plink : how to filter outliers for GWAS ?
GWAS Plink
7.4 years ago by nlehmann ▴ 140
4
votes
1
reply
5.4k
views
On what condition(s) should a K-medoids algorithms stop when clustering organisms ?
PAM Clustering K-medoids Unsupervised learning
updated 8.0 years ago by 27k • written 8.0 years ago by ▴ 140
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