User: sakshisingh.bioinfo

Reputation:
30
Status:
New User
Location:
India/Varanasi/BHU
Twitter:
@BioinfoRajput
Last seen:
2 months, 1 week ago
Joined:
3 years, 6 months ago
Email:
s******************@gmail.com

I am a Bioinformaticist and Immunologist with wide interest area of stem cell biology and their therapeutic targets.

Posts by sakshisingh.bioinfo

<prev • 27 results • page 1 of 3 • next >
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splice junction screening
... Dear All, I have identified splice junction with the help of tophat and want to find out novel splice sites. I am using the visualizer tool to find the gene name. Can anyone suggest me how to retrieve gene name from Integrative Genomics Viewer (IGV) or use any other tool? Thanks and regards, Sakshi ...
visualization splice junction written 9 weeks ago by sakshisingh.bioinfo30
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Trinity error using Perl script
... Hello all, I am working on `Trinity` for de-novo assembly of my data but stuck at differential gene expression step (screenshot). I have 3 sample files and followed the steps as mentioned in the trinity tutorial but somehow getting this error in `edgeR`. Error, cmd: R --vanilla -q < matrix. ...
trinity perl script written 6 months ago by sakshisingh.bioinfo30 • updated 6 months ago by ATpoint25k
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fastq.gz splitter tool
... Hey everyone, I want to split fastaq.gz file because its too big to deal it. Please give me suggestion how to solve this problem. Thanks, Sakshi ...
fastq.gz splitter written 19 months ago by sakshisingh.bioinfo30 • updated 19 months ago by Bastien Hervé4.5k
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Comment: C: Need to know the importance of prediction
... Thanks for the information. ...
written 20 months ago by sakshisingh.bioinfo30
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Need to know the importance of prediction
... Hello team, We always study the importance of structure prediction and simulation method. Prediction of protein folding from its amino acid sequence and to refine the model using Newton's equation. If this is so important, why predicted model could not submit in PDB or any other pioneer database. ...
md simulation structure prediction written 20 months ago by sakshisingh.bioinfo30 • updated 20 months ago by WouterDeCoster42k
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stereochemical issue after MD simulation
... Hi everyone, I need suggestion from you all. I have performed MD simulation of predicted protein with the help of GROMACS. After completing the simulation, I checked stereo-chemical analysis but I found that the amino acids of simulated protein are more in a disallowed region as compare to initiall ...
stereochemical error gromacs written 21 months ago by sakshisingh.bioinfo30 • updated 10 months ago by rprog00830
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Answer: A: Problem with Homology model- Ramachandram plot 89%. How to modify further
... Use ModRefiner server for structural refinement and then check the RAMPAGE, ERRAT and Verify3D. ...
written 2.6 years ago by sakshisingh.bioinfo30
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MD simulation using YASARA
... Hello everyone, I am working on protein structure prediction and want to do molecular dynamics simulation using YASARA software. Would you have knowledge about this software, how to do it. Need urgent help. Thanks, Sakshi ...
md simulation written 2.7 years ago by sakshisingh.bioinfo30
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Answer: A: Visual informatics in molecular biology...?
... Hi, I have also gone through the same problem but never be hopeless. Firstly you have to study the basic structural biology for drug targeted experiment such as the topic molecular docking and dynamics simulations and also learn some software related to docking and visualization. ...
written 2.7 years ago by sakshisingh.bioinfo30
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Anti-miRNA oligonuclotide identification
... Hello everyone, I am keenly interested to know about how to identify anti-miRNA oligonucleotide using *in-silico* approach. Is there any method or tool for do it. Plz guide me. Waiting for the response. Thank you, Sakshi ...

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Popular Question 16 months ago, created a question with more than 1,000 views. For calculate FPKM/RPKM values by user friendly software
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