User: rasii

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rasii0
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Posts by rasii

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Pseudogenes-Can we use them?
... Thanks @WouterDeCoster for your advice really appreciate it... I'm really new to this work so have to say quiet ignorant on things that can be done with this data. You mentioned that pathway analysis shouldn't be only thing to do with a gene list. Can you suggest what else I can do with this data? ...
written 12 months ago by rasii0
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Answer: A: Pseudogenes-Can we use them?
... Hi Brain, What I want to do is look at what genes are differentially methylated, do heatmaps on them to show difference in methylation across the treatment groups and then do some pathway enrichment analysis on them. So I guess if I'm going to look at pathways, pseudogenes are useless as they shoul ...
written 12 months ago by rasii0
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Pseudogenes-Can we use them?
... Hi all, I recently analysed the methylation of some patient samples using the Illumina EPIC methylation microarray. After doing the DMR analysis I got alot of pseudogenes and miRNA in my list. Some of these were significantly hyper-/hypo- methylated. I guess my question is are these pseudogenes us ...
pseudogenes illumina epic microarray methylation written 12 months ago by rasii0
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Differential Methylation in specific groups
... Hi all, I'm really new to all this methylation stuff so was wondering if you guys can help me. I have some patient samples that I have analysed methylation with the Illumina methylation EPIC microarray. I am using RnBeads to analyse the data which has worked awesome. I'm stuck at the differential m ...
illumina microarray rnbeads methylation epic written 14 months ago by rasii0 • updated 5 months ago by hongbo91920
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Comment: C: Pathway analysis with Methylation EPIC microarray data
... Thanks heaps for you suggestions! Will try the methods you mentioned a shot :) ...
written 14 months ago by rasii0
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Pathway analysis with Methylation EPIC microarray data
... Hi everyone, I have some methylation microarray data obtained from illumina Methylation EPIC microarray and I wanted to know how I can do some pathway analysis. I have analysed the DMRs and have mean.diff of CpG sites, promoter etc in the form of a table now I want to know what I need to do next an ...
gene illumina methylationepic microarray pathway written 14 months ago by rasii0 • updated 14 months ago by EagleEye4.8k
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Lumi error when using importMethylIDAT
... Hi all, I'm trying to analyse some methylation data that was taken from Illumina methylation EPIC microarray using lumi and I get the following error when I try to import my data. What could I be doing wrong? Any help is highly appreciated.. > library("lumi", lib.loc="C:/R-3.3.0beta/library") ...
illumina methylation epic microarray lumi written 19 months ago by rasii0

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