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322
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convert unmapped bam to fastqs and preserve tag
GATK
updated 13 months ago by ▴ 190 • written 13 months ago by ▴ 40
0
votes
1
reply
657
views
Comment: Comment: Picard CalculateHsMetrics perTargetCoverage for Novaseq bams
18 months ago by genya35 ▴ 40
0
votes
3
replies
657
views
Picard CalculateHsMetrics perTargetCoverage for Novaseq bams
Picard
updated 18 months ago by 127k • written 18 months ago by ▴ 40
0
votes
0
replies
420
views
struct2geno error
analysis population R
20 months ago by genya35 ▴ 40
0
votes
0
replies
581
views
get % of >= Q30 Bases (PF) per index with InterOp
next-gen
2.1 years ago by genya35 ▴ 40
0
votes
0
replies
390
views
count reads with a combination of specific SNPs in bam
SNP next-gen
2.4 years ago by genya35 ▴ 40
0
votes
1
reply
365
views
visualizing a break in specific gene in exome data
next-gen
2.4 years ago by genya35 ▴ 40
0
votes
2
replies
1.0k
views
gene expression analysis: convert RPKM to TPM
RNA-Seq
updated 2.5 years ago by ▴ 170 • written 2.5 years ago by ▴ 40
0
votes
0
replies
498
views
calculating total yield for Illumina sequencing run
next-gen
2.6 years ago by genya35 ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: parsing run info data with Interop
2.6 years ago by genya35 ▴ 40
0
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0
replies
3.1k
views
Comment: C: Parser for Illumina Novaseq metadata
2.6 years ago by genya35 ▴ 40
1
vote
2
replies
1.3k
views
parsing run info data with Interop
next-gen
2.6 years ago by genya35 ▴ 40
1
vote
2
replies
922
views
variable regions within exons of a gene
gene
updated 3.1 years ago by 20 • written 5.7 years ago by ▴ 40
0
votes
4
replies
1.4k
views
caluculate q30 from bam file with samtools
next-gen
3.2 years ago by genya35 ▴ 40
0
votes
1
reply
1.4k
views
Comment: A: caluculate q30 from bam file with samtools
3.2 years ago by genya35 ▴ 40
0
votes
0
replies
559
views
Migmap to output the entire queried sequence
ngs
3.5 years ago by genya35 ▴ 40
1
vote
8
replies
1.3k
views
how to identify degenerate primers in reads
next-gen
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 40
0
votes
0
replies
641
views
Comment: C: aligning with igblast
3.8 years ago by genya35 ▴ 40
0
votes
2
replies
641
views
aligning with igblast
alignment
3.8 years ago by genya35 ▴ 40
2
votes
1
reply
2.5k
views
blastn output format with full subject's sequence
sequence
updated 4.0 years ago by 34k • written 4.0 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: how to identify degenerate primers in reads
4.0 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: how to identify degenerate primers in reads
4.0 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: how to identify degenerate primers in reads
4.0 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: how to identify degenerate primers in reads
4.0 years ago by genya35 ▴ 40
0
votes
1
reply
683
views
Comment: C: group reads by sequence length
4.0 years ago by genya35 ▴ 40
0
votes
3
replies
683
views
group reads by sequence length
next-gen
4.0 years ago by genya35 ▴ 40
0
votes
1
reply
860
views
Correct percent identity based on gene coverage.
alignment
updated 4.1 years ago by 20k • written 4.1 years ago by ▴ 40
0
votes
1
reply
25k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.1 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: tools for unique reads generation from fastqs
4.1 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: tools for unique reads generation from fastqs
4.1 years ago by genya35 ▴ 40
1
vote
9
replies
1.3k
views
tools for unique reads generation from fastqs
next-gen
4.1 years ago by genya35 ▴ 40
0
votes
1
reply
1.3k
views
Comment: C: tools for unique reads generation from fastqs
4.1 years ago by genya35 ▴ 40
0
votes
1
reply
611
views
Calculate the synonymous/nonsynonymous substitution rates between a sequence and a reference
alignment
4.1 years ago by genya35 ▴ 40
0
votes
0
replies
622
views
igblast hits are not showing up in clonotype summary table
next-gen
4.1 years ago by genya35 ▴ 40
1
vote
1
reply
849
views
Pull files from ion torrent server
next-gen
4.1 years ago by genya35 ▴ 40
2
votes
2
replies
1.6k
views
tools for global alignment
alignment
updated 4.2 years ago by 34k • written 4.2 years ago by ▴ 40
5
votes
6
replies
1.1k
views
interpreting fasta header
alignment
4.2 years ago by genya35 ▴ 40
0
votes
2
replies
1.1k
views
Return number of mismatches for multiple sequences
alignment
updated 4.2 years ago by 14k • written 4.2 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: tools for Microsatellite Instability Identification
4.6 years ago by genya35 ▴ 40
0
votes
1
reply
881
views
macrosatellite instability regions important in cancers
sequence
updated 4.6 years ago by 84k • written 4.6 years ago by ▴ 40
1
vote
2
replies
1.3k
views
tools for Microsatellite Instability Identification
next-gen
4.6 years ago by genya35 ▴ 40
0
votes
0
replies
4.4k
views
Comment: C: how to run bioinformatics tools via docker
4.6 years ago by genya35 ▴ 40
0
votes
1
reply
2.5k
views
Comment: C: finding mutations in rna-seq transcriptome
4.7 years ago by genya35 ▴ 40
0
votes
1
reply
2.5k
views
Comment: C: finding mutations in rna-seq transcriptome
4.7 years ago by genya35 ▴ 40
0
votes
0
replies
1.1k
views
Comment: C: Alternative tools to SplitNCigarReads
4.7 years ago by genya35 ▴ 40
0
votes
3
replies
1.1k
views
Alternative tools to SplitNCigarReads
RNA-Seq
4.7 years ago by genya35 ▴ 40
0
votes
1
reply
934
views
Comment: C: write Pindel error to text file
4.8 years ago by genya35 ▴ 40
0
votes
1
reply
934
views
Comment: C: write Pindel error to text file
4.8 years ago by genya35 ▴ 40
0
votes
1
reply
934
views
Comment: C: write Pindel error to text file
4.8 years ago by genya35 ▴ 40
0
votes
7
replies
934
views
write Pindel error to text file
software error
updated 4.8 years ago by 84k • written 4.8 years ago by ▴ 40
116 results • Page 1 of 3
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