Moderator: lakhujanivijay

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lakhujanivijay4.7k
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Bioinformatics 💻 Programmer | Linux ❤ Lover | Constant ☕ Learner

A passionate bioinformatician interested in developing solutions for analyzing, visualizing and integrating clinical and research data.

Me = ( ¼ Bioinformatician ) + ( ¼ Programmer ) +  ( ½ Biologist )

Let's connect !

 

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ORCID iD iconhttps://orcid.org/0000-0002-6529-0841

Posts by lakhujanivijay

<prev • 888 results • page 2 of 89 • next >
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How to adjust/add cytoband information in specific regions of karyoplot?
... Hi I am trying to plot copy number information using [karyoploteR][1] over the karyotype plot; a snapshot of which looks something like this I just want to have the cytoband in the regions where there is either a `pink` or a `green` bar. For example, you can notice that there is no cytoband inf ...
R bioconductor cnv karyoploter written 10 weeks ago by lakhujanivijay4.7k • updated 10 weeks ago by zx87549.0k
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Comment: C: Amplicon seq and targeted seq
... Hi https://www.biostars.org/u/6090/ This is more related to wet lab sequencing approaches/protocols rather than bioinformatics. You could find the answer if you could google well enough. ...
written 10 weeks ago by lakhujanivijay4.7k
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Is there any way to avoid adding the PG tag while creating a SAM output from BWA ?
... Hi Is there any way to avoid adding the PG tag while creating a SAM output from BWA ? The only option I could think of is to use `samtools reheader` and adding a new header without the `PG` tag. I am wondering if that would be possible during the mapping step itself. ...
pg sam bwa written 11 weeks ago by lakhujanivijay4.7k • updated 11 weeks ago by Devon Ryan94k
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Comment: C: bcftools variant filteration
... Hi https://www.biostars.org/u/37605/ do you know how to get rid of this error/warning? `Both INFO/DP and FORMAT/DP exist, which one do you want?` I indeed have DP in INFO and the FORMAT columns in my vcf file ...
written 11 weeks ago by lakhujanivijay4.7k
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Comment: C: Hadoop BAM - how to use?
... Hi https://www.biostars.org/u/60266/ Please strictly adhere to biostars policies. We have removed your advertisement from your response. ...
written 12 weeks ago by lakhujanivijay4.7k • updated 12 weeks ago by ATpoint29k
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Comment: C: How to create Illumina sample sheet file for single index data?
... That solved the issue. Thanks https://www.biostars.org/u/7403/ ...
written 12 weeks ago by lakhujanivijay4.7k
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How to create Illumina sample sheet file for single index data?
... Hi All I need help regarding how to format the sample sheet file (required for demultiplexing using `bcl2fastq`) for single index data. Usually I have dual index data and I keep below column names in the sample sheet. - Sample_ID - Sample_Name - Sample_Plate - Sample_Well - I ...
novaseq illumina single bcl2fastq index written 12 weeks ago by lakhujanivijay4.7k • updated 12 weeks ago by genomax78k
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Answer: A: Discrepancy in number of BLAST hits
... That should not be a *discrepancy*. Those *hundred additional entries* reported for each hit are high-scoring segment pairs (HSPs) ...
written 12 weeks ago by lakhujanivijay4.7k
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Comment: C: Delta CT in R
... Can you please edit the title of your question? "**Delta CT in R**" is very meaningless. Quoting from https://www.biostars.org/p/75548/ > Choose a good title: It should be brief and precise. A good title will > help you attract more people and get answers faster. It will also help > othe ...
written 3 months ago by lakhujanivijay4.7k
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Comment: C: Whole genome sequencing or whole exome sequencing- which is better and why?
... Consider reading this [link][1] . And this is not a forum rather a question. [1]: https://allseq.com/kb/wgsvswes/ ...
written 3 months ago by lakhujanivijay4.7k

Latest awards to lakhujanivijay

Great Question 5 weeks ago, created a question with more than 5,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Great Question 8 weeks ago, created a question with more than 5,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 11 weeks ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: How to apply a function to a list and get results as a list in R?
Scholar 12 weeks ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Scholar 3 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to apply a function to a list and get results as a list in R?
Popular Question 4 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 4 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Student 4 months ago, asked a question with at least 3 up-votes. For What are some good resources to learn shell script for NGS pipeline development?
Appreciated 4 months ago, created a post with more than 5 votes. For A: How to extract unmapped Paired end reads from BWA output sam file
Student 4 months ago, asked a question with at least 3 up-votes. For What are some good resources to learn shell script for NGS pipeline development?
Scholar 6 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Good Answer 6 months ago, created an answer that was upvoted at least 5 times. For C: bioinformatics phd .in distance education forum ...
Popular Question 7 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 7 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 7 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 8 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Scholar 8 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Popular Question 8 months ago, created a question with more than 1,000 views. For Why does base quality of reads generally decreases at the end of the read?

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