Moderator: Vijay Lakhujani

gravatar for Vijay Lakhujani
Vijay Lakhujani3.4k
Reputation:
3,430
Status:
Trusted
Location:
India
Website:
https://lakhujanivijay...
Twitter:
vijay_lakhujani
Scholar ID:
Google Scholar Page
Last seen:
11 hours ago
Joined:
3 years ago
Email:
l*************@gmail.com

Bioinformatician♦Programmer♦Learner


Howdy!

  • I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in Python, PERL, R and BASH. Programming is so much fun!
  • I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
  • I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)

Let's connect !

 

 

Posts by Vijay Lakhujani

<prev • 683 results • page 2 of 69 • next >
1
vote
0
answers
79
views
0
answers
Comment: C: Any packages to validate FASTA file?
... Must check this using [seqkit][1] https://bioinf.shenwei.me/seqkit/usage/#seq [1]: https://bioinf.shenwei.me/seqkit ...
written 11 days ago by Vijay Lakhujani3.4k
0
votes
2
answers
104
views
2
answers
Comment: C: Link for pre-indexed BWA indices for human reference
... Hi https://www.biostars.org/u/22075/ Thanks for sharing the link. But, are you sure that contains BWA indices? What I could see are only fasta and annotation files? Also, that ftp (*ftp://ussd-ftp.illumina.com/README.txt*) asks for username and password. ...
written 11 days ago by Vijay Lakhujani3.4k
2
votes
2
answers
104
views
2
answers
Link for pre-indexed BWA indices for human reference
... I am looking for pre-indexed BWA indices for human reference. Found a similar post with only a little help (some links are broken) https://www.biostars.org/p/5474/ ...
genome reference bwa human index written 12 days ago by Vijay Lakhujani3.4k
0
votes
3
answers
129
views
3
answers
Comment: C: Is there a GRCh37 equivalent of EnsDb.Hsapiens.v86 or some other method for gett
... Did you try [Ensembl Biomart][1] ? [1]: http://grch37.ensembl.org/biomart/martview/3904b6fee58178b3ee1021fa57a009d5 ...
written 12 days ago by Vijay Lakhujani3.4k
0
votes
2
answers
97
views
2
answers
Answer: A: How to know that our trinity denovo assembly is good or not?
... Using the normal N50 metric for transcriptome assemblies can be highly misleading, as transcriptomes do not strive to achieve long contig lengths and high N50, but instead one contig for each transcript. Furthermore, the most highly expressed transcripts do not necessarily constitute the longest one ...
written 13 days ago by Vijay Lakhujani3.4k
0
votes
0
answers
108
views
0
answers
Comment: C: genes upstream or downstream of a LNcRNA
... Not solution but a direction. You will require coordinates of protein coding genes in BED format. step#1 : fetch the coordinates 300 kb up and downstream of the LncRNAs. You may use `awk` or shell or a simple PERL one liner for that. Pipe that into a standard BED file format. step#2 : use bedtool ...
written 13 days ago by Vijay Lakhujani3.4k
2
votes
1
answer
104
views
1
answers
Comment: C: compare expression between the same gene in different organisms?
... One tip - **" ask questions!! "**. I strongly suggest to talk to your supervisor and understand the project. Ask questions, ask often, ask questions that you think are "stupid" (*asking stupid questions is a wise man's approach*). Ask until the picture is clear, set small goals at first, break the ...
written 15 days ago by Vijay Lakhujani3.4k
1
vote
1
answer
176
views
1
answers
Comment: C: RNA-seq mapping rate
... Would you mind adding the hisat2 alignment summary here ? ...
written 15 days ago by Vijay Lakhujani3.4k
0
votes
2
answers
246
views
2
answers
Comment: C: Variant Effect Predictor
... Add exact commands, please ...
written 18 days ago by Vijay Lakhujani3.4k
1
vote
1
answer
158
views
1
answers
Comment: C: trimmomatic 0.36 error
... I have updated the category from TOOL to QUESTION. can you please add the command you ran, trimmomatic version along with the exact error message ? ...
written 18 days ago by Vijay Lakhujani3.4k

Latest awards to Vijay Lakhujani

Teacher 6 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 18 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 18 days ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 23 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 25 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 26 days ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Popular Question 4 weeks ago, created a question with more than 1,000 views. For What are some good resources to learn shell script for NGS pipeline development?
Scholar 4 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Popular Question 5 weeks ago, created a question with more than 1,000 views. For What are some good resources to learn shell script for NGS pipeline development?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For What are some good resources to learn shell script for NGS pipeline development?
Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Popular Question 6 weeks ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Error encountered while running stattest from ballgown package
Commentator 12 weeks ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Popular Question 3 months ago, created a question with more than 1,000 views. For Too low mapping percentage using HISAT2 on human reference genome.
Popular Question 4 months ago, created a question with more than 1,000 views. For Error encountered while running stattest from ballgown package
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For C: bioinformatics phd .in distance education forum ...
Appreciated 4 months ago, created a post with more than 5 votes. For C: bioinformatics phd .in distance education forum ...
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Popular Question 5 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 5 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 5 months ago, created a question with more than 1,000 views. For Error encountered while running stattest from ballgown package
Popular Question 5 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1326 users visited in the last hour