... > How do I find out the read lenght of a fastq file?
if this is what you are asking then
`seqkit fx2tab -nl `
You can find seqkit [here]
: https://bioinf.shenwei.me/seqkit/ ...
... Hi https://www.biostars.org/u/17505/
That's a header incompatibility issue and can be resolved by editing your reference fasta file. Here are few suggestions:
1. check the headers of your reference fasta file:
`grep "^>" /home/kumarm/allan-work/RNASEq-alignment/ref_sequence.fa`
2. check the ...
... See a [python script] which I wrote sometimes back
: https://raw.githubusercontent.com/lakhujanivijay/Bioinformatics-Problems-Rosalind/master/FastQ_to_fasta_converter/fastq_2_fasta.py ...
... The supplementary information [here] says
> Query our laboratory information management system to retrieve seven
> Picard sequencing quality control metrics for each sample: GCDROPOUT,
> ATDROPOUT, MEANINSERTSIZE, ONBAITVSSELECTED, PCTPFUQREADS,
> PCTTARGETBASES10X, and PCTTARGETBASE ...