Moderator: Vijay Lakhujani

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Vijay Lakhujani2.5k
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India
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vijay_lakhujani
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Last seen:
12 hours ago
Joined:
2 years, 6 months ago
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l*************@gmail.com

Bioinformatician♦Programmer♦Learner


Howdy!

  • I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in Python, PERL, R and BASH. Programming is so much fun!
  • I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
  • I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)

Let's connect !

 

Posts by Vijay Lakhujani

<prev • 490 results • page 2 of 49 • next >
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Comment: C: What is the normal N50 range when assembly the virus genome.
... Hello [archie.w.lee][1], Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. Thank you! [1]: https://www.biostars.org/u/23416/ ...
written 5 days ago by Vijay Lakhujani2.5k
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Comment: C: Generate the sequence dictionary
... Hi [jahanzaib119311][1] Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. Thank you! [1]: https://www.biostars.org/u/47283/ ...
written 5 days ago by Vijay Lakhujani2.5k
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Comment: C: GFF3 to fasta (error)
... Paste the output of these commands here grep ">" Muschr4.fsa | head -10 AND grep ">" Muschr4.fsa | grep "seq0" ...
written 6 days ago by Vijay Lakhujani2.5k
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Comment: C: Split sequence according the 'N' base
... [Alex][1], you should upvote OR accept a post as answer if any one or several posts helped or answered your question click [here][2] to know how --------------------------- Remember, you can accept multiple answers, as long as they provide valid solution to your top level problem. Accepting an an ...
written 6 days ago by Vijay Lakhujani2.5k
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Answer: A: Split sequence according the 'N' base
... A python solution **Dependencies: Biopython** #!/usr/bin/python2.7 from Bio import SeqIO import getopt,sys,re def usage(): print "Usage: split.py -i -o " try: options, remainder=getopt.getopt(sys.argv[1:], 'i:o:h') except getopt.Get ...
written 6 days ago by Vijay Lakhujani2.5k
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Comment: C: Genome assembly N50
... An interesting read [What is Wrong with N50? How can we make it better?][1] [1]: http://homolog.us/blogs/blog/2012/06/26/what-is-wrong-with-n50-how-can-we-make-it-better/ ...
written 7 days ago by Vijay Lakhujani2.5k
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Comment: C: What is the advantage of variant calling using RNA-seq technique?
... Sharing a [paper][1] [1]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791257/ ...
written 7 days ago by Vijay Lakhujani2.5k
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Comment: C: Naive Bayes from Scratch
... Hello shreyasarkar0! We believe that this post does not fit the main topic of this site. Question too broad! Please specify your question and show some effort from your side on how to solve this. For this reason we have closed your question. This allows us to keep the site focused on the topics ...
written 7 days ago by Vijay Lakhujani2.5k • updated 7 days ago by WouterDeCoster29k
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Answer: A: How to know the mm9 genome size?
... [this][1] link may help [1]: http://asia.ensembl.org/Mus_musculus/Info/Annotation ...
written 7 days ago by Vijay Lakhujani2.5k
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Comment: C: Microarray Probesets Quality Control - Why excluded non-autosomal probesets?
... And what do you call that pipeline? is it published ? Please share additional details else it's very difficult to answer such questions! ...
written 7 days ago by Vijay Lakhujani2.5k

Latest awards to Vijay Lakhujani

Popular Question 4 days ago, created a question with more than 1,000 views. For Error running Trinity
Teacher 8 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Appreciated 21 days ago, created a post with more than 5 votes. For C: bioinformatics phd .in distance education forum ...
Popular Question 21 days ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 21 days ago, created a question with more than 1,000 views. For Why does base quality of reads generally decreases at the end of the read?
Student 21 days ago, asked a question with at least 3 up-votes. For Too low mapping percentage using HISAT2 on human reference genome.
Popular Question 21 days ago, created a question with more than 1,000 views. For Warning encountered while transcript abundance estimation using stringtie
Great Question 21 days ago, created a question with more than 5,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 21 days ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Student 23 days ago, asked a question with at least 3 up-votes. For Too low mapping percentage using HISAT2 on human reference genome.
Popular Question 25 days ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Scholar 4 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Scholar 11 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Popular Question 3 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Scholar 3 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 6 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Voter 6 months ago, voted more than 100 times.

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