User: kamel

gravatar for kamel
kamel10
Reputation:
10
Status:
New User
Location:
Last seen:
11 hours ago
Joined:
3 years, 1 month ago
Email:
g*************@gmail.com

Posts by kamel

<prev • 104 results • page 1 of 11 • next >
0
votes
0
answers
83
views
0
answers
non-redundant polymorphic site
... Hi Biostar, Can be a basic question, I am working on 12 fungal strains, I have detected SNPs and InDels in each genome.  my question is how can I calculate the number of non-redundant polymorphic sites between the 12 strain ?. Thank you in advance ...
indels alignment snp written 5 weeks ago by kamel10
0
votes
1
answer
150
views
1
answers
Comment: C: Errors in file embl
... yes the validator found this as an error, unfortunately I delete them manually ...
written 9 weeks ago by kamel10
0
votes
1
answer
150
views
1
answers
Comment: C: Errors in file embl
... Thank you for your reply. Yes I ran gff3_sp_flag_short_intron.pl without any problem. Except sometimes it put twice / pseudo in the same CDS which is not recommended for a valid file, but it works very well. Thanks again. ...
written 9 weeks ago by kamel10
0
votes
1
answer
150
views
1
answers
Comment: C: Errors in file embl
... Thanks @Juke-34 for your help. It is well installed. I have a quick question, Do you think that the argument --translate of EMBLmyGFF3 is mandatory for submission? ...
written 9 weeks ago by kamel10
0
votes
1
answer
150
views
1
answers
Comment: C: Errors in file embl
... Thank you @jike-34 for your reply. I installed all perl dependencies of GAAS to use your scripts gff3_sp_flag_short_intron.pl. I ran it but it also asks the module "BILS :: CheckModule" but mcpan it can not find this module ...
written 9 weeks ago by kamel10
3
votes
1
answer
150
views
1
answer
Errors in file embl
... Hi biostar, Maybe basic questions but I can not solve this problem. I wanted to validate an embl file. After the validation I find two errors (below) ERROR: Intron is usually expected to be at least 10 nt long ERROR: Abutting features can not be adjacent between neighboring exons. Have an idea ab ...
genome annotation embl file written 9 weeks ago by kamel10 • updated 9 weeks ago by Juke-342.2k
0
votes
1
answer
209
views
1
answers
Comment: C: how to locate genes coding on the reference genome
... Thank you gmap is more convenient in this case. now I have the positions of my sequences on the reference sequence. I just posted a question to see how I could graphically represent these positions on the chromosomes. Do you have an idea? ...
written 3 months ago by kamel10
0
votes
0
answers
100
views
0
answers
(Closed) how to graphically represent positions on chromosomes
... Hi biostar, I located CDS sequences of my 6 samples on the reference genome by gmap. Now I have all the positions on the chromosome of my reference sequence. Now I want to graph the gmap results I found. Do you have an idea so that I can see my positions graphically. Thank you in advance ...
software R sequence written 3 months ago by kamel10
0
votes
3
answers
269
views
3
answers
Comment: C: How to extract only sequences that contain a specific percentage of Cysteines (
... Thanks for the help @finswimmer this is very useful ...
written 3 months ago by kamel10
0
votes
3
answers
269
views
3
answers
Comment: C: How to extract only sequences that contain a specific percentage of Cysteines (
... Thanks for the help ...
written 3 months ago by kamel10

Latest awards to kamel

Centurion 9 weeks ago, created 100 posts.
Supporter 4 months ago, voted at least 25 times.
Popular Question 6 months ago, created a question with more than 1,000 views. For Download error 1000g2015aug for annovar
Popular Question 7 months ago, created a question with more than 1,000 views. For Question: How to generate a count matrix with featurecounts

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1486 users visited in the last hour