User: kamel

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kamel0
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Posts by kamel

<prev • 71 results • page 1 of 8 • next >
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help to generate 100% Stacked Bar Chart or a histogram
... Hi, I have the orthology results on 8 proteomes to generate the core, accessory and specific sequences. I need to represent my data for a 100% Stacked Bar Chart or a histogram on R to see the cores, accessories and specific sequences between the 8 proteomes. Do you have an idea about which code to ...
gene R sequence written 9 weeks ago by kamel0
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transl_table (or gcode) for fungi
... Hi, I want to create .embl file from gff3 of a fungi strain. I want to know transl_table (or gcode) that must be used for fungi for bacteria I find transl_table 11 that is used. but for fungiI have no idea thank you in advance for your help ...
genome assembly next-gen conversion sequencing written 10 weeks ago by kamel0 • updated 10 weeks ago by genomax54k
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Do you know a tool that can make pan-genome on on genomes of fungi
... Hi, Do you know a tool that can make pan-genome on genomes of fungi ??? For information: I have the strains already annotated. Thank you in advance for your help, Kamel ...
genome gene alignment pan-genome software written 12 weeks ago by kamel0
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Comment: C: how to identify cores, accesory and unique sequences from proteomes
... Excuse me, but I did not understand what you said. I used proteinortho and got a matrix (.txt file) that does not contain the unique sequences. do you have a method or tool that aligns and gives a matrix with unique, accessory and cores. ...
written 3 months ago by kamel0
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how to identify cores, accesory and unique sequences from proteomes
... Hi, I have 8 proteomes in multifasta format, the number of protein sequences between 13000 and 14000 sequences. I need to align these sequences to see the cores, the accessory and the unique sequences between these 8 proteomes. do you have a method to do this PLZ. Four informations: I used proteino ...
genome alignment sequence written 3 months ago by kamel0
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Comment: C: Problem installing FastME for OrthoFinder
... me too the same problem, you solved it ?? ...
written 3 months ago by kamel0
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Comment: C: Detection of SNPs
... Thanks for your help guillaume.rbt ...
written 3 months ago by kamel0
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Comment: C: Detection of SNPs
... it is done . I redid the question ...
written 3 months ago by kamel0
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Comment: C: Detection of SNPs
... I recovered the position of my gene by blast, it is in chromosome 2 (2: 2241384-2244383). I search on vcftools to a commade that allows me to study the snp in this region but I have not found. can you help me ...
written 3 months ago by kamel0
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Comment: C: Detection of SNPs
... Hi H.Hasani. as I said to guillaume. I have detected snp of whole genomes (fungi). then that interests me to look directly snp of a gene of 3kb. I have a fasta file of this genes. I can add the opion -L followed by this fasta file of 3kb of this gene ??? ...
written 3 months ago by kamel0

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