User: kamel

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kamel0
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Posts by kamel

<prev • 68 results • page 1 of 7 • next >
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Comment: C: how to identify cores, accesory and unique sequences from proteomes
... Excuse me, but I did not understand what you said. I used proteinortho and got a matrix (.txt file) that does not contain the unique sequences. do you have a method or tool that aligns and gives a matrix with unique, accessory and cores. ...
written 19 hours ago by kamel0
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how to identify cores, accesory and unique sequences from proteomes
... Hi, I have 8 proteomes in multifasta format, the number of protein sequences between 13000 and 14000 sequences. I need to align these sequences to see the cores, the accessory and the unique sequences between these 8 proteomes. do you have a method to do this PLZ. Four informations: I used proteino ...
genome alignment sequence written 19 hours ago by kamel0
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Comment: C: Problem installing FastME for OrthoFinder
... me too the same problem, you solved it ?? ...
written 5 days ago by kamel0
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Comment: C: Detection of SNPs
... Thanks for your help guillaume.rbt ...
written 5 days ago by kamel0
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Comment: C: Detection of SNPs
... it is done . I redid the question ...
written 6 days ago by kamel0
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Comment: C: Detection of SNPs
... I recovered the position of my gene by blast, it is in chromosome 2 (2: 2241384-2244383). I search on vcftools to a commade that allows me to study the snp in this region but I have not found. can you help me ...
written 6 days ago by kamel0
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Comment: C: Detection of SNPs
... Hi H.Hasani. as I said to guillaume. I have detected snp of whole genomes (fungi). then that interests me to look directly snp of a gene of 3kb. I have a fasta file of this genes. I can add the opion -L followed by this fasta file of 3kb of this gene ??? ...
written 6 days ago by kamel0
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Comment: C: Detection of SNPs
... HI guillaume.rbt I have detected SNPs in whole genomes by GATK and I have .vcf files. my question is how I can extract SNPs from this gene (I do not know the name of this gene but I have a fasta file of 3kb which corresponds to my gene of interest). could you give me the vcftools command to extract ...
written 6 days ago by kamel0
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Detection of SNPs
... Hi Biostars, I have detected SNPs in whole genomes by GATK and I have .vcf files. my question is how I can extract SNPs from this gene (I do not know the name of this gene but I have a fasta file of 3kb which corresponds to my gene of interest). could you give me the vcftools command to extract the ...
genome gene alignment snp written 6 days ago by kamel0 • updated 6 days ago by Alex Reynolds23k
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Comment: C: how i can extract the orthologous sequences
... I will try to use it and come back to you. thank you ...
written 6 days ago by kamel0

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