User: kamel

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kamel0
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Posts by kamel

<prev • 84 results • page 1 of 9 • next >
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Comment: C: how to find an ortholog of a protein of interest from a full genome sequence of
... you can use also orthofinder or orthomcl...for that ...
written 21 hours ago by kamel0
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Comment: C: Software to detect snps and indels on pacbio data
... No information about my question in this post ...
written 8 days ago by kamel0
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Software to detect snps and indels on pacbio data
... Dear colleagues, I want to detect SNPs and Indels on pacbio data (I did the subreads mapping on the reference sequence by minimap). Do you have an idea about the tools that identify variations on pacbio data ??? ...
indels snp pacbio written 9 days ago by kamel0
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Comment: C: Question about Base calling for pacbio data
... these are subreads generated by sequel ...
written 14 days ago by kamel0
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Comment: C: Criteria for protein sequences to be orthologous
... Just for your sentence "you need to see how likely it is that your 2 sequences diverged from a common ancestor" I am working on 25 proteomes and each proteome contains at least 9000 proteins. From a methodological point of view, I need what as a method (tool) to obtain significant results. I use pro ...
written 16 days ago by kamel0
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Comment: C: Do you think that the proteins sequences that share 40% identity 60% coverage an
... I rectify the title. Thank you. ...
written 16 days ago by kamel0
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Comment: C: Do you think that the proteins sequences that share 40% identity 60% coverage an
... Could you explain to me more. ...
written 16 days ago by kamel0
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Comment: C: Do you think that the proteins sequences that share 40% identity 60% coverage an
... I am working on haploid eukaryotic (Fungi), I use the tool "Proteinortho". But I need to define the parameter values to use. ...
written 16 days ago by kamel0
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Criteria for protein sequences to be orthologous
... Dear colleagues of Biostar, Do you think that the protein sequences that share 40% identity 60% coverage and E-value of 0.00001 are orthologous sequences ?? do you have any recommendations ?? I want to study the pan-proteome. ...
alignment sequence blastp written 16 days ago by kamel0
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Comment: C: Question about Base calling for pacbio data
... I want to know what values should be used for these parameters on pacbio sequel data (these are whole genome data from a haploid fungus). For example on the illumina data I use the values below: For Base calling -------------------- $ HaplotypeCaller -R Reference.fa -I sorted_marked.bam -plo ...
written 16 days ago by kamel0

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