User: m.eitel

gravatar for m.eitel
m.eitel0
Reputation:
0
Status:
New User
Last seen:
16 hours ago
Joined:
2 years, 2 months ago
Email:
m******@lmu.de

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by m.eitel

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
44
views
0
answers
filtering of mapped Nanopore reads
... Hi. I am trying to filter a bam file. I mapped raw nanopore reads to a reference assembly and want to keep only reads that map (almost) full length. bwa mem and minimap2 softmask bases at both ends that do not match to the reference and I want to keep only those reads that map full-length and allow ...
assembly next-gen sequencing written 17 hours ago by m.eitel0
0
votes
0
answers
159
views
0
answers
Comment: C: 3 peaks in per base coverage plot
... updated the post to include images ...
written 3 days ago by m.eitel0
0
votes
0
answers
159
views
0
answers
Comment: C: 3 peaks in per base coverage plot
... thanks. however the link should work ...
written 3 days ago by m.eitel0
0
votes
0
answers
159
views
0
answers
Comment: C: 3 peaks in per base coverage plot
... Thanks for your comment. I added links to the graphs. Please le me know what you think. -Michael ...
written 3 days ago by m.eitel0
2
votes
0
answers
159
views
0
answers
3 peaks in per base coverage plot
... I have problems interpreting the results from our assemblies. We have sequenced an animal with nanopore and Illumina reads. I first performed Canu v1.7.1 assemblies of subsets of the nanopore reads to see effects on the outcome. Here I generated individual assemblies with all reads >1kb, >2kb, ...
genome assembly next-gen written 4 days ago by m.eitel0
0
votes
0
answers
400
views
0
answers
tophat2 RNAseq mapping to haplogenomes
... Hello I am wondering how to use tophat2 to map RNAseq data to the haplogenomes of my sequenced species? That is which options do I need to set to allow mapping of the RNA reads to both (almost identical) copies of the genome so that I end up with transcripts (after stringtie) on both haplocontigs i ...
rna-seq written 2.2 years ago by m.eitel0 • updated 19 months ago by Biostar ♦♦ 20

Latest awards to m.eitel

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 942 users visited in the last hour