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Comment: Comment: how to compare mapping of WES samples to human pangenome?
21 months ago by bitpir ▴ 250
2
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5
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1.4k
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how to compare mapping of WES samples to human pangenome?
WES pangenome vg
21 months ago by bitpir ▴ 250
3
votes
5
replies
1.6k
views
query UCSC db for CDS coordinates (Gencode)
CDS mysql UCSC bed
updated 2.2 years ago by 151k • written 2.2 years ago by ▴ 250
0
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1
reply
874
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PF_INDEL_RATE calculation and definition
picard AlignmentSummaryMetrics picardmetrics
2.3 years ago by bitpir ▴ 250
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0
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874
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Answer: Answer: PF_INDEL_RATE calculation and definition
2.3 years ago by bitpir ▴ 250
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0
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559
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QUAL differences for different caller
score vardict quality vcf freebayes calling variant
2.5 years ago by bitpir ▴ 250
0
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1
reply
965
views
variant analysis using Freebayes
calling freebayes false variant positives
updated 2.6 years ago by ▴ 240 • written 2.7 years ago by ▴ 250
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0
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531
views
understanding UMAP mappability bed file
UMAP mappability
3.1 years ago by bitpir ▴ 250
0
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0
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724
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Comment: C: getting fastq ID with SNPs
4.2 years ago by bitpir ▴ 250
0
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2
replies
724
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getting fastq ID with SNPs
SNP genome browser fastq
4.2 years ago by bitpir ▴ 250
2
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1
reply
1.4k
views
hsmetrics on_target_bases and on_baits_bases calculation
hsmetrics hybridization selection
updated 4.7 years ago by ▴ 40 • written 4.8 years ago by ▴ 250
0
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1
reply
2.8k
views
understanding pysam.AlignmentFile output
pysam sam bam
updated 5.3 years ago by ▴ 330 • written 5.3 years ago by ▴ 250
0
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2
replies
1.1k
views
relationship between relative abundance and relative activity
meta-transcriptomics RNA-seq
updated 6.3 years ago by 20 • written 6.5 years ago by ▴ 250
0
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0
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1.2k
views
help with interpreting metagenomic metatranscriptomic data
meta-transcriptomic meta-genomic
6.4 years ago by bitpir ▴ 250
0
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0
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1.1k
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Comment: C: relationship between relative abundance and relative activity
6.5 years ago by bitpir ▴ 250
0
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0
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1.3k
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measure relative abundance from rna-seq
RNA-Seq meta-transcriptomics
6.5 years ago by bitpir ▴ 250
1
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0
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1.8k
views
how to speed up cdhit clustering?
cdhit protein clustering nucleotide clustering
6.6 years ago by bitpir ▴ 250
1
vote
3
replies
2.3k
views
how to concatenate contigs from repseq?
refseq concatenate ncbi
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 250
0
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0
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2.3k
views
Comment: C: how to concatenate contigs from repseq?
6.7 years ago by bitpir ▴ 250
0
votes
1
reply
959
views
tools/resources on mixed-integer programming
probability mixed-integer programming
updated 6.7 years ago by 45k • written 6.7 years ago by ▴ 250
0
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1
reply
1.1k
views
taxa identification using signature vs alignment to refseq
alignment signatures refseq metagenomics
6.8 years ago by bitpir ▴ 250
1
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1
reply
1.8k
views
finding secondary taxid using ete3 ncbiTaxa
ete3 python ncbiTaxa taxonomyid
6.9 years ago by bitpir ▴ 250
1
vote
1
reply
3.9k
views
difference between mapq=0 and samtools flag 0x900
samtools mapq
updated 6.9 years ago by 105k • written 6.9 years ago by ▴ 250
0
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6
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1.7k
views
getting a combination of all predicted genes
bedtools gff
updated 7.0 years ago by 36k • written 7.0 years ago by ▴ 250
0
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1
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1.7k
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Comment: C: getting a combination of all predicted genes
7.0 years ago by bitpir ▴ 250
0
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0
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2.8k
views
Comment: C: getting feature annotations for all NCBI Refseq sequences
7.0 years ago by bitpir ▴ 250
0
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1
reply
2.8k
views
Comment: C: getting feature annotations for all NCBI Refseq sequences
7.0 years ago by bitpir ▴ 250
0
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1
reply
2.8k
views
Comment: C: getting feature annotations for all NCBI Refseq sequences
7.0 years ago by bitpir ▴ 250
2
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5
replies
2.8k
views
getting feature annotations for all NCBI Refseq sequences
ncbi refseq annotation CDS
updated 7.0 years ago by 151k • written 7.0 years ago by ▴ 250
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0
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4.8k
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Comment: C: IGV tracks gene annotation
7.0 years ago by bitpir ▴ 250
0
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1
reply
4.8k
views
Comment: C: IGV tracks gene annotation
7.0 years ago by bitpir ▴ 250
2
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4
replies
4.8k
views
IGV tracks gene annotation
IGV gene GFF
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 250
0
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0
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1.6k
views
complete and partial ORF identification
ORF gene prediciton Glimmer Genemark
7.1 years ago by bitpir ▴ 250
0
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0
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2.4k
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Comment: C: Glimmer output file
7.1 years ago by bitpir ▴ 250
0
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0
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2.4k
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Comment: C: Glimmer output file
7.1 years ago by bitpir ▴ 250
0
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4
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2.4k
views
Glimmer output file
ORF prediction Glimmer3
7.1 years ago by bitpir ▴ 250
4
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5
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3.0k
views
best way to do joint genotyping
gatk joint-genotyping vcf
updated 7.2 years ago by 20 • written 7.3 years ago by ▴ 250
0
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0
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1.7k
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Comment: C: how does Agilent/xGen design hybridization probes?
7.3 years ago by bitpir ▴ 250
3
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2
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1.7k
views
how does Agilent/xGen design hybridization probes?
exome sequencing custom probes
updated 7.3 years ago by ★ 1.7k • written 7.3 years ago by ▴ 250
0
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0
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3.0k
views
Comment: C: best way to do joint genotyping
7.3 years ago by bitpir ▴ 250
0
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1
reply
3.0k
views
Comment: C: best way to do joint genotyping
7.3 years ago by bitpir ▴ 250
16
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3
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29k
views
Answer: A: how to plot multi pheatmap into one figure
7.5 years ago by bitpir ▴ 250
0
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1
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5.0k
views
Answer: A: do blast search using gi numbers
updated 7.8 years ago by 151k • written 7.8 years ago by ▴ 250
3
votes
12
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5.0k
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do blast search using gi numbers
blast
7.8 years ago by bitpir ▴ 250
4
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3
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8.3k
views
ncbi error C++ exception
blast ncbi
7.8 years ago by bitpir ▴ 250
2
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0
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8.3k
views
Answer: A: ncbi error C++ exception
7.8 years ago by bitpir ▴ 250
0
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1
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5.0k
views
Comment: C: do blast search using gi numbers
7.8 years ago by bitpir ▴ 250
0
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1
reply
5.0k
views
Comment: C: do blast search using gi numbers
7.9 years ago by bitpir ▴ 250
0
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0
replies
2.4k
views
finding NCBI protein ID and associated COG ID
blastx nr database COG
7.9 years ago by bitpir ▴ 250
0
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1
reply
1.9k
views
Comment: C: customize reference genome
7.9 years ago by bitpir ▴ 250
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