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0
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0
replies
1.1k
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Comment:
Comment: how to compare mapping of WES samples to human pangenome?
15 months ago by
bitpir
▴ 250
2
votes
5
replies
1.1k
views
how to compare mapping of WES samples to human pangenome?
WES
pangenome
vg
15 months ago by
bitpir
▴ 250
3
votes
5
replies
1.2k
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 20 months ago by
GenoMax
148k • written 21 months ago by
bitpir
▴ 250
0
votes
1
reply
732
views
PF_INDEL_RATE calculation and definition
picard
AlignmentSummaryMetrics
picardmetrics
22 months ago by
bitpir
▴ 250
0
votes
0
replies
732
views
Answer:
Answer: PF_INDEL_RATE calculation and definition
22 months ago by
bitpir
▴ 250
0
votes
0
replies
428
views
QUAL differences for different caller
score
vardict
quality
vcf
freebayes
calling
variant
2.1 years ago by
bitpir
▴ 250
0
votes
1
reply
801
views
variant analysis using Freebayes
calling
freebayes
false
variant
positives
updated 2.2 years ago by
young_bioinformatician
▴ 240 • written 2.2 years ago by
bitpir
▴ 250
0
votes
0
replies
435
views
understanding UMAP mappability bed file
UMAP
mappability
2.7 years ago by
bitpir
▴ 250
0
votes
0
replies
635
views
Comment:
C: getting fastq ID with SNPs
3.8 years ago by
bitpir
▴ 250
0
votes
2
replies
635
views
getting fastq ID with SNPs
SNP
genome browser
fastq
3.8 years ago by
bitpir
▴ 250
2
votes
1
reply
1.2k
views
hsmetrics on_target_bases and on_baits_bases calculation
hsmetrics
hybridization selection
updated 4.3 years ago by
parvathi.sudha
▴ 40 • written 4.3 years ago by
bitpir
▴ 250
0
votes
1
reply
2.6k
views
understanding pysam.AlignmentFile output
pysam
sam
bam
updated 4.9 years ago by
onestop_data
▴ 330 • written 4.9 years ago by
bitpir
▴ 250
0
votes
2
replies
995
views
relationship between relative abundance and relative activity
meta-transcriptomics
RNA-seq
updated 5.8 years ago by
Biostar
20 • written 6.0 years ago by
bitpir
▴ 250
0
votes
0
replies
1.1k
views
help with interpreting metagenomic metatranscriptomic data
meta-transcriptomic
meta-genomic
5.9 years ago by
bitpir
▴ 250
0
votes
0
replies
995
views
Comment:
C: relationship between relative abundance and relative activity
6.0 years ago by
bitpir
▴ 250
0
votes
0
replies
1.3k
views
measure relative abundance from rna-seq
RNA-Seq
meta-transcriptomics
6.1 years ago by
bitpir
▴ 250
1
vote
0
replies
1.7k
views
how to speed up cdhit clustering?
cdhit
protein clustering
nucleotide clustering
6.1 years ago by
bitpir
▴ 250
1
vote
3
replies
2.1k
views
how to concatenate contigs from repseq?
refseq
concatenate
ncbi
updated 6.2 years ago by
h.mon
35k • written 6.2 years ago by
bitpir
▴ 250
0
votes
0
replies
2.1k
views
Comment:
C: how to concatenate contigs from repseq?
6.2 years ago by
bitpir
▴ 250
0
votes
1
reply
892
views
tools/resources on mixed-integer programming
probability
mixed-integer programming
updated 6.2 years ago by
Ram
44k • written 6.2 years ago by
bitpir
▴ 250
0
votes
1
reply
1.0k
views
taxa identification using signature vs alignment to refseq
alignment
signatures
refseq
metagenomics
6.4 years ago by
bitpir
▴ 250
1
vote
1
reply
1.7k
views
finding secondary taxid using ete3 ncbiTaxa
ete3
python
ncbiTaxa
taxonomyid
6.4 years ago by
bitpir
▴ 250
1
vote
1
reply
3.7k
views
difference between mapq=0 and samtools flag 0x900
samtools
mapq
updated 6.4 years ago by
Devon Ryan
104k • written 6.5 years ago by
bitpir
▴ 250
0
votes
6
replies
1.5k
views
getting a combination of all predicted genes
bedtools
gff
updated 6.5 years ago by
Alex Reynolds
36k • written 6.5 years ago by
bitpir
▴ 250
0
votes
1
reply
1.5k
views
Comment:
C: getting a combination of all predicted genes
6.5 years ago by
bitpir
▴ 250
0
votes
0
replies
2.5k
views
Comment:
C: getting feature annotations for all NCBI Refseq sequences
6.6 years ago by
bitpir
▴ 250
0
votes
1
reply
2.5k
views
Comment:
C: getting feature annotations for all NCBI Refseq sequences
6.6 years ago by
bitpir
▴ 250
0
votes
1
reply
2.5k
views
Comment:
C: getting feature annotations for all NCBI Refseq sequences
6.6 years ago by
bitpir
▴ 250
2
votes
5
replies
2.5k
views
getting feature annotations for all NCBI Refseq sequences
ncbi
refseq
annotation
CDS
updated 6.6 years ago by
GenoMax
148k • written 6.6 years ago by
bitpir
▴ 250
0
votes
0
replies
4.2k
views
Comment:
C: IGV tracks gene annotation
6.6 years ago by
bitpir
▴ 250
0
votes
1
reply
4.2k
views
Comment:
C: IGV tracks gene annotation
6.6 years ago by
bitpir
▴ 250
2
votes
4
replies
4.2k
views
IGV tracks gene annotation
IGV
gene
GFF
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
bitpir
▴ 250
0
votes
0
replies
1.4k
views
complete and partial ORF identification
ORF
gene prediciton
Glimmer
Genemark
6.6 years ago by
bitpir
▴ 250
0
votes
0
replies
2.2k
views
Comment:
C: Glimmer output file
6.6 years ago by
bitpir
▴ 250
0
votes
0
replies
2.2k
views
Comment:
C: Glimmer output file
6.6 years ago by
bitpir
▴ 250
0
votes
4
replies
2.2k
views
Glimmer output file
ORF prediction
Glimmer3
6.6 years ago by
bitpir
▴ 250
4
votes
5
replies
2.8k
views
best way to do joint genotyping
gatk
joint-genotyping
vcf
updated 6.7 years ago by
Biostar
20 • written 6.8 years ago by
bitpir
▴ 250
0
votes
0
replies
1.6k
views
Comment:
C: how does Agilent/xGen design hybridization probes?
6.8 years ago by
bitpir
▴ 250
3
votes
2
replies
1.6k
views
how does Agilent/xGen design hybridization probes?
exome sequencing
custom probes
updated 6.8 years ago by
jean.elbers
★ 1.7k • written 6.8 years ago by
bitpir
▴ 250
0
votes
0
replies
2.8k
views
Comment:
C: best way to do joint genotyping
6.8 years ago by
bitpir
▴ 250
0
votes
1
reply
2.8k
views
Comment:
C: best way to do joint genotyping
6.8 years ago by
bitpir
▴ 250
16
votes
3
replies
28k
views
Answer:
A: how to plot multi pheatmap into one figure
7.0 years ago by
bitpir
▴ 250
0
votes
1
reply
4.6k
views
Answer:
A: do blast search using gi numbers
updated 7.4 years ago by
GenoMax
148k • written 7.4 years ago by
bitpir
▴ 250
3
votes
12
replies
4.6k
views
do blast search using gi numbers
blast
7.4 years ago by
bitpir
▴ 250
4
votes
3
replies
8.1k
views
ncbi error C++ exception
blast
ncbi
7.4 years ago by
bitpir
▴ 250
2
votes
0
replies
8.1k
views
Answer:
A: ncbi error C++ exception
7.4 years ago by
bitpir
▴ 250
0
votes
1
reply
4.6k
views
Comment:
C: do blast search using gi numbers
7.4 years ago by
bitpir
▴ 250
0
votes
1
reply
4.6k
views
Comment:
C: do blast search using gi numbers
7.4 years ago by
bitpir
▴ 250
0
votes
0
replies
2.3k
views
finding NCBI protein ID and associated COG ID
blastx
nr database
COG
7.4 years ago by
bitpir
▴ 250
0
votes
1
reply
1.7k
views
Comment:
C: customize reference genome
7.4 years ago by
bitpir
▴ 250
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