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396
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Comment: Comment: how to compare mapping of WES samples to human pangenome?
6 weeks ago by bitpir ▴ 230
2
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5
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396
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how to compare mapping of WES samples to human pangenome?
WES pangenome vg
6 weeks ago by bitpir ▴ 230
3
votes
5
replies
704
views
query UCSC db for CDS coordinates (Gencode)
CDS mysql UCSC bed
updated 6 months ago by 134k • written 6 months ago by ▴ 230
0
votes
1
reply
465
views
PF_INDEL_RATE calculation and definition
picard AlignmentSummaryMetrics picardmetrics
8 months ago by bitpir ▴ 230
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0
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465
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Answer: Answer: PF_INDEL_RATE calculation and definition
8 months ago by bitpir ▴ 230
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0
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248
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QUAL differences for different caller
score vardict quality vcf freebayes calling variant
10 months ago by bitpir ▴ 230
0
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1
reply
477
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variant analysis using Freebayes
calling freebayes false variant positives
updated 12 months ago by ▴ 190 • written 12 months ago by ▴ 230
0
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0
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233
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understanding UMAP mappability bed file
UMAP mappability
18 months ago by bitpir ▴ 230
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0
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453
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Comment: C: getting fastq ID with SNPs
2.6 years ago by bitpir ▴ 230
0
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2
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453
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getting fastq ID with SNPs
SNP genome browser fastq
2.6 years ago by bitpir ▴ 230
2
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1
reply
938
views
hsmetrics on_target_bases and on_baits_bases calculation
hsmetrics hybridization selection
updated 3.1 years ago by ▴ 40 • written 3.1 years ago by ▴ 230
0
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1
reply
2.3k
views
understanding pysam.AlignmentFile output
pysam sam bam
updated 3.7 years ago by ▴ 330 • written 3.7 years ago by ▴ 230
0
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2
replies
789
views
relationship between relative abundance and relative activity
meta-transcriptomics RNA-seq
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 230
0
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0
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938
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help with interpreting metagenomic metatranscriptomic data
meta-transcriptomic meta-genomic
4.7 years ago by bitpir ▴ 230
0
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0
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789
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Comment: C: relationship between relative abundance and relative activity
4.8 years ago by bitpir ▴ 230
0
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0
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1.1k
views
measure relative abundance from rna-seq
RNA-Seq meta-transcriptomics
4.9 years ago by bitpir ▴ 230
1
vote
0
replies
1.5k
views
how to speed up cdhit clustering?
cdhit protein clustering nucleotide clustering
4.9 years ago by bitpir ▴ 230
1
vote
3
replies
1.8k
views
how to concatenate contigs from repseq?
refseq concatenate ncbi
updated 5.0 years ago by 34k • written 5.0 years ago by ▴ 230
0
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0
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1.8k
views
Comment: C: how to concatenate contigs from repseq?
5.0 years ago by bitpir ▴ 230
0
votes
1
reply
711
views
tools/resources on mixed-integer programming
probability mixed-integer programming
updated 5.1 years ago by 40k • written 5.1 years ago by ▴ 230
0
votes
1
reply
857
views
taxa identification using signature vs alignment to refseq
alignment signatures refseq metagenomics
5.2 years ago by bitpir ▴ 230
1
vote
1
reply
1.4k
views
finding secondary taxid using ete3 ncbiTaxa
ete3 python ncbiTaxa taxonomyid
5.2 years ago by bitpir ▴ 230
1
vote
1
reply
3.0k
views
difference between mapq=0 and samtools flag 0x900
samtools mapq
updated 5.3 years ago by 103k • written 5.3 years ago by ▴ 230
0
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6
replies
1.1k
views
getting a combination of all predicted genes
bedtools gff
updated 5.4 years ago by 35k • written 5.4 years ago by ▴ 230
0
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1
reply
1.1k
views
Comment: C: getting a combination of all predicted genes
5.4 years ago by bitpir ▴ 230
0
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0
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2.2k
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Comment: C: getting feature annotations for all NCBI Refseq sequences
5.4 years ago by bitpir ▴ 230
0
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1
reply
2.2k
views
Comment: C: getting feature annotations for all NCBI Refseq sequences
5.4 years ago by bitpir ▴ 230
0
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1
reply
2.2k
views
Comment: C: getting feature annotations for all NCBI Refseq sequences
5.4 years ago by bitpir ▴ 230
2
votes
5
replies
2.2k
views
getting feature annotations for all NCBI Refseq sequences
ncbi refseq annotation CDS
updated 5.4 years ago by 134k • written 5.4 years ago by ▴ 230
0
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0
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3.3k
views
Comment: C: IGV tracks gene annotation
5.4 years ago by bitpir ▴ 230
0
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1
reply
3.3k
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Comment: C: IGV tracks gene annotation
5.4 years ago by bitpir ▴ 230
2
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4
replies
3.3k
views
IGV tracks gene annotation
IGV gene GFF
updated 5.4 years ago by 34k • written 5.4 years ago by ▴ 230
0
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0
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1.2k
views
complete and partial ORF identification
ORF gene prediciton Glimmer Genemark
5.4 years ago by bitpir ▴ 230
0
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0
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1.8k
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Comment: C: Glimmer output file
5.4 years ago by bitpir ▴ 230
0
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0
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1.8k
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Comment: C: Glimmer output file
5.4 years ago by bitpir ▴ 230
0
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4
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1.8k
views
Glimmer output file
ORF prediction Glimmer3
5.4 years ago by bitpir ▴ 230
4
votes
5
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2.4k
views
best way to do joint genotyping
gatk joint-genotyping vcf
updated 5.6 years ago by 20 • written 5.7 years ago by ▴ 230
0
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0
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1.2k
views
Comment: C: how does Agilent/xGen design hybridization probes?
5.6 years ago by bitpir ▴ 230
3
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2
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1.2k
views
how does Agilent/xGen design hybridization probes?
exome sequencing custom probes
updated 5.6 years ago by ★ 1.7k • written 5.6 years ago by ▴ 230
0
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0
replies
2.4k
views
Comment: C: best way to do joint genotyping
5.7 years ago by bitpir ▴ 230
0
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1
reply
2.4k
views
Comment: C: best way to do joint genotyping
5.7 years ago by bitpir ▴ 230
14
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3
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24k
views
Answer: A: how to plot multi pheatmap into one figure
5.8 years ago by bitpir ▴ 230
0
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1
reply
3.9k
views
Answer: A: do blast search using gi numbers
updated 6.2 years ago by 134k • written 6.2 years ago by ▴ 230
3
votes
12
replies
3.9k
views
do blast search using gi numbers
blast
6.2 years ago by bitpir ▴ 230
2
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0
replies
7.4k
views
Answer: A: ncbi error C++ exception
6.2 years ago by bitpir ▴ 230
4
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3
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7.4k
views
ncbi error C++ exception
blast ncbi
6.2 years ago by bitpir ▴ 230
0
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1
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3.9k
views
Comment: C: do blast search using gi numbers
6.2 years ago by bitpir ▴ 230
0
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1
reply
3.9k
views
Comment: C: do blast search using gi numbers
6.2 years ago by bitpir ▴ 230
0
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0
replies
2.0k
views
finding NCBI protein ID and associated COG ID
blastx nr database COG
6.2 years ago by bitpir ▴ 230
0
votes
1
reply
1.5k
views
Comment: C: customize reference genome
6.2 years ago by bitpir ▴ 230
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