User: Jonasr

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Jonasr120
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Posts by Jonasr

<prev • 18 results • page 1 of 2 • next >
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Comment: C: A Group Of Protein Interaction
... See here: http://mint.bio.uniroma2.it/mint/search/searchWelcome.do ...
written 7.5 years ago by Jonasr120
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Comment: C: In Writing Biomedical Applications, Which Disadvantages Of R/Advantages Of Pytho
... I wouldn't say that python is a more 'real' programming language than R but I get your point and agree. If you want to do variety of things and especially something that is not related to statistics I would always choose python over R for the higher simplicity. ...
written 7.5 years ago by Jonasr120
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Comment: C: Multiple Sequence Alignment In Biopython.
... Thanks so much! I have been searching for how to retrieve the alignments shown under the sequence tab on the PDB website for quite some time. Taking some time again today I finally found the answer :) I even knew it was in the mmCIF after some time but couldn't find where exactly! ...
written 7.6 years ago by Jonasr120
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Answer: A: Get Indexes Of Atoms Involved In Dihedral Angles For A Specific Residue In A Pdb
... You can easily do this in BioJava as well if it suits you better. Here's a code example: http://www.biojava.org/docs/api/org/biojava/bio/structure/Structure.html (See 'How can I calculate Phi and Psi angles of AminoAcids?') ...
written 7.6 years ago by Jonasr120
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Answer: A: Complete Protein Structure When Only Alpha Carbons Are Known
... Take a look at Nir-Ben Tal's work in: "Cα-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications" Proc Natl Acad Sci USA.; 2010; DOI: 10.1073/pnas.0914717107; PMID: 20534491 You can get the PDF here: http://ibis.tau.ac.il/wiki/nir_bental/index.php/P ...
written 7.9 years ago by Jonasr120
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Comment: C: How You Talk About Yourself When You Want Take A Grant
... Not exactly the same question but this might be interesting as well: http://biostar.stackexchange.com/questions/12661/why-do-you-want-to-work-in-this-lab ...
written 7.9 years ago by Jonasr120
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Comment: C: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
... Wonderful! MMD :D ...
written 7.9 years ago by Jonasr120
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Comment: C: . [Blastall] Warning: Unable To Open Bos.Db.Nin
... Ok, seems good from what I can see. Maybe it's a BioPerl problem, I don't really know the package though. For a test you could try to run BLAST directly on the commandline and see if that works. ...
written 8.0 years ago by Jonasr120
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Comment: C: Hhpred - How To Install ?
... Sure, although it sounds like you are still having problems? If related feel free to ask further questions if not best accept the answer so it can be regarded as resolved by others. ...
written 8.0 years ago by Jonasr120
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Comment: C: Hidden Markov Models In Genomic Analysis
... 'Richard's book' is the one I mentioned in the comments to Gjain's answer. Richard Durbin. ...
written 8.0 years ago by Jonasr120

Latest awards to Jonasr

Supporter 6.8 years ago, voted at least 25 times.
Teacher 6.8 years ago, created an answer with at least 3 up-votes. For A: Complete Protein Structure When Only Alpha Carbons Are Known

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