User: sosal

gravatar for sosal
sosal10
Reputation:
10
Status:
New User
Location:
South Korea / Seoul / SNU
Website:
http://sosal.kr/
Last seen:
10 months, 1 week ago
Joined:
4 years ago
Email:
s****@snu.ac.kr

Posts by sosal

<prev • 4 results • page 1 of 1 • next >
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RNAseq normalization for new data
... Hello biostars! I want to implement a model that predicts disease from RNA-seq data. Therefore, the training data were normalized by limma voom, and trained by randomForest. However, new input data has not been normalized in the same way as training data. If I have to normalized the new data with ...
normalization tool rna-seq voom written 12 months ago by sosal10
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Microarray similarity estimation
... Hello, I am cell biologist. I succeeded in differentiating stem cells. I want to test whether the cells are differentiated correctly or not by using microarray. (There is gold standard cell line.) And now, I have three groups of microarray data. Group1: Before differentiation Group2: After diffe ...
microarray written 3.8 years ago by sosal10 • updated 3.8 years ago by Jean-Karim Heriche22k
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ExomeCNV floating CNV result
... Hi all. I have been trying to use ExomeCNV to make an input for EXPANDS (tumor purity tool) (EXPANDS journal paper says "Copy-number segments were calculated using an approach similar to ExomeCNV") **-This is CNV input format of EXPANDs-** chr startpos endpos **CN_Estimate** 22 26290824 ...
expands exomecnv tool cnv written 4.0 years ago by sosal10 • updated 4.0 years ago by Pierre Lindenbaum128k
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Comment: C: RNa seq data: GO annotation
... You have to do a GO analysis on the DEGs. However you got an GO lists annotated to the genes by the reference assembly, you can not believe whether the GO lists are significantly enriched to the DEGs or not. You can easily find the RNA-seq DEG analysis using GO enrichment analysis. ex) http://europ ...
written 4.0 years ago by sosal10

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