User: xing

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xing0
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Posts by xing

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Use samtools to access bam file in aws s3 storage
... I have a private aws bucket with aws_access_key_id, aws_secret_access_key, and region How set I set up samtools 1.3 to make it work on bam files on aws s3 storage? follow the instruction in https://www.biostars.org/p/147772/#147845 I can make the following command work $ samtools view s3://1000ge ...
samtools written 2.4 years ago by xing0
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Answer: A: Tool for random access to indexed BAM files in S3?
... I have a private aws bucket with aws_access_key_id, aws_secret_access_key, and region How set I set up samtools 1.3 to make it work on bam files on aws s3 storage? follow the instruction above I can make the following command work $ samtools view s3://1000genomes/phase1/data/NA12878/exome_alignmen ...
written 2.4 years ago by xing0
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Answer: A: Samtools/htslib/bcftools 1-3 released
... Any instruction on how to use Amazon S3 storage? How should I set the aws_access_key_id and aws_secret_access_key stuffs to access my own bucket? ...
written 2.4 years ago by xing0

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