User: Seigfried

gravatar for Seigfried
Seigfried30
Reputation:
30
Status:
New User
Location:
Last seen:
1 month, 1 week ago
Joined:
1 year, 8 months ago
Email:
n*******************@gmail.com

Posts by Seigfried

<prev • 23 results • page 1 of 3 • next >
1
vote
2
answers
145
views
2
answers
Answer: A: Bowtie2 aligner not generating .sam file.
... The difference between -S and -s -s/--skip Skip (i.e. do not align) the first reads or pairs in the input. -S File to write SAM alignments to. By default, alignments are written to the "standard out" or "stdout" filehandle (i.e. the console). ...
written 6 weeks ago by Seigfried30
0
votes
0
answers
179
views
0
answers
Comment: C: R merge columns in the same file with identical column names and remove duplicat
... Thank you for the reply In my case my terms were basically GO terms which I wanted to reduce (1->3)-beta-D-glucan metabolic process (1->3)-beta-D-glucan metabolic process acetyl-CoA metabolic process fksA fksA AN3817 rhoA rhoA AN3869 sunA sunA AN4923 gelA ...
written 6 weeks ago by Seigfried30
0
votes
0
answers
179
views
0
answers
(Closed) R merge columns in the same file with identical column names and remove duplicates
... Dear all I have a dataframe containing columns with identical names for some reason. I wish to combine these columns with the same name with removing the duplicates I tried using merge but I do not want to enter the column names one by one like merge (x, y) horse sheep horse A ...
R written 6 weeks ago by Seigfried30
0
votes
1
answer
218
views
1
answers
Comment: C: Bedtools map to generate a new bedgraph
... I used intersectbed but forgot about -wb. Amazing. Thank you so much. ...
written 3 months ago by Seigfried30
2
votes
1
answer
218
views
1
answer
Bedtools map to generate a new bedgraph
... Hello I have a bed file with Start and End co-ordinates and I also have a bedgraph file with scores. I want to create a new bedgraph file using the co-ordinates in my bed file. I know that bedtools map can do this. However, I cannot figure out which of the options to use -o options sum - ...
bedtools map written 3 months ago by Seigfried30 • updated 3 months ago by michael.ante2.0k
0
votes
0
answers
235
views
0
answers
RTrackLayer import bed without name and strand orientation
... I have a bed file like this ChrIII_A_nidulans_FGSC_A4 0 10 0.83700 ChrIII_A_nidulans_FGSC_A4 10 43 1.11600 ChrIII_A_nidulans_FGSC_A4 43 59 1.39500 ChrIII_A_nidulans_FGSC_A4 59 65 1.67400 ChrIII_A_nidulans_FGSC_A4 65 74 1.95300 As you can see there are no Strand name columns or ...
rtracklayer bed R written 4 months ago by Seigfried30 • updated 3 months ago by Biostar ♦♦ 20
0
votes
3
answers
477
views
3
answers
Comment: C: Heatmap.2 giving specific color to a value and start gradient after
... Yes this is it! Didnt think of that. Thank you! ...
written 5 months ago by Seigfried30
0
votes
3
answers
477
views
3
answers
Answer: A: Heatmap.2 giving specific color to a value and start gradient after
... Hi Samuel any( sapply(data, is.infinite) ) [1] FALSE any( sapply(data, is.na) ) [1] TRUE any( sapply(data, is.nan) ) [1] FALSE There is no infinite value or NAN in the matrix. I thought that the hclust cannot plot the distance between samples because of too many NAs ...
written 6 months ago by Seigfried30
2
votes
3
answers
477
views
3
answers
Heatmap.2 giving specific color to a value and start gradient after
... I am trying to plot a Heatmap. My data is as follows. GO s_3d s_6d s_17d peptide metabolic process 4.71E-29 2.84828E-20 2.70719E-24 organonitrogen compound biosynthetic process 3.38158E-22 3.26674E-15 6.3903E-22 positive regulation of gene expression 0.057421474 negative regul ...
R heatmap.2 heatmap written 6 months ago by Seigfried30 • updated 6 months ago by e.rempel540
0
votes
9
answers
1.6k
views
9
answers
Answer: A: ChIP-Seq TSS Line Plot
... Hello @Guangchuang Yu Is there any way I can isolate reads per a specific bin? For example between '-500 to 0' or between '-1000 to -500' ? Also can I change the size of the bin? plotAvgProf(tagMatrixList, xlim=c(-3000, 3000)) Can I change this interval i.e. the size of the bin? Something like axi ...
written 14 months ago by Seigfried30

Latest awards to Seigfried

Popular Question 5 months ago, created a question with more than 1,000 views. For ChIP-Seq TSS Line Plot

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1749 users visited in the last hour