User: Paul

gravatar for Paul
Paul20
Reputation:
20
Status:
New User
Location:
India
Last seen:
16 hours ago
Joined:
5 years, 8 months ago
Email:
p***************@gmail.com

Posts by Paul

<prev • 25 results • page 1 of 3 • next >
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Comment: C: SPAdes: <jemalloc>: Error in malloc(): out of memory
... How much more?? around 32 GB RAM? ...
written 3 days ago by Paul20
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5 follow
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SPAdes: <jemalloc>: Error in malloc(): out of memory
... I am working on De-novo assembly of a bacterial genome. While running SPAdes I get this following error. ********* : Error in malloc(): out of memory == Error == system call for: "['/root/SPAdes-3.5.0-Linux/bin/hammer', '/root/spades_AM1_output/corrected/configs/config.info']" fini ...
de novo assembly spades bacterial genome written 3 days ago by Paul20 • updated 3 days ago by h.mon5.7k
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How to assemble contigs?
... Hi have a new strain of bacterial genome for which sequencing was done using illumina. The sequence is a pair-end read for which I have done de-novo assembly and generated contigs with minimum length of 200 using CLC genomics workbench and online servers. Now, my aim is to assemble this contigs ...
assembly contigs denovo sequencing written 5 days ago by Paul20 • updated 5 days ago by haro70
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How do I analyze and annotate the results of a Bacterial De novo assembly ?
... I have a new strain of Bacteria for which no reference genome is available at NCBI. The strain is sequenced using Illumina and the paired-end reads were obtained. The pair-end reads were taken and subjected to De-novo assembly using CLC genomics workbench. Once the process of de-novo assembly was ...
de-novo assembly clc genomics bacteria written 13 days ago by Paul20 • updated 13 days ago by yassmine20
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Comment: C: Bacterial de novo genome assembly
... Thanks a lot for the detailed explanation. Is there any best tool to do the bacterial genome assembly in windows? ...
written 20 days ago by Paul20
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Comment: C: De novo genome assembly
... Ya general procedures with the softwares available ...
written 24 days ago by Paul20
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Comment: C: De novo genome assembly
... Yes it is for Bacteria ...
written 24 days ago by Paul20
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10 follow
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Bacterial de novo genome assembly
... I have pair end Fastq files from illumina (**Fast1.fastq** and **Fast2.fastq**). Now, how should I proceed further with de-novo genome assembly? I'am completely new to this field of assembling genome sequences? Which open-end tools can be used? Please help me with the tools and tutorials which can ...
de-novo genome next-gen sequencing assembly written 24 days ago by Paul20 • updated 24 days ago by Brian Bushnell11k
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Comment: C: Mapping two genome annotation files
... will it work for Mycobacterium Smegmatis? ...
written 27 days ago by Paul20
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Mapping two genome annotation files
... I have two reference sequences (A and B). For both A and B, I have done variant analysis and got the SNPs and Indels, respectively. Now to annotate A and B with respect to their gene location, I have two different **annotation files** (for A and B, individually), though both A and B are the referen ...
next-gen sequencing written 27 days ago by Paul20 • updated 27 days ago by Pierre Lindenbaum93k

Latest awards to Paul

Supporter 24 days ago, voted at least 25 times.
Popular Question 10 months ago, created a question with more than 1,000 views. For Mapping HGNC ID to uniprot ID

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