User: sdum

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sdum20
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10 months, 1 week ago
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1 year, 5 months ago
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s*************@univ-nantes.fr

Posts by sdum

<prev • 5 results • page 1 of 1 • next >
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Answer: A: GeneSCF: problem with KEGG annotation
... Thank you very much!! All is all right now! ...
written 10 months ago by sdum20
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GeneSCF: problem with KEGG annotation
... Hello, I use geneSCF since several months without problems to annotate human gene list with sym id against GO_all and KEGG databases. However, since some days, I encounter problem with KEGG. The problem occur during the step "Retreving gene list for hsa from KEGG" where I obtain a very very short l ...
genescf written 10 months ago by sdum20
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Comment: C: Tool to separate human and mouse rna seq reads
... Of course, I don't want to concatenate R1 and R2. But, for one sample, I have several fastq splitted for R1, and the same number for R2 (splitted by illumina software casava). I wondering if it is possible to run only one bbplit, but I will launch it several times, in parrallel, and then concatenate ...
written 17 months ago by sdum20
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Comment: C: Tool to separate human and mouse rna seq reads
... Thanks a lot. I try to use it now and I've a new question. Is it possible to use splitted fastq? Or I must concatenate them before? Here is my command line I have used to try: ../bbsplit.sh in=/raw/fastq/141_CACTTCGA_L003_R#_*.fastq.gz ref=human.fa,mouse.fa basename=out_%_R#.fastq.gz outu1=unmappe ...
written 17 months ago by sdum20
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Comment: C: Tool to separate human and mouse rna seq reads
... Hi Brian, is there a publication or a description of this tool available? I will try it in few days. Thanks a lot ...
written 17 months ago by sdum20

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