User: rm16

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rm160
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Posts by rm16

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Comment: C: Tophat error: Bowtie not found on this system
... This is what is printed when I type in "bowtie2" with no other arguments (I edited out some of the stuff in the middle): > No index, query, or output file specified! Bowtie 2 version 2.2.5 by > Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea) Usage: > bowtie2 [options]* -x {- ...
written 4.4 years ago by rm160
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Tophat error: Bowtie not found on this system
... I am trying to align RNA-seq reads to my reference but I keep getting the error: > [2016-06-04 13:58:45] Beginning TopHat run (v2.0.9) > ----------------------------------------------- [2016-06-04 13:58:45] Checking for Bowtie Bowtie 2 not found, checking for older version.. > Error: Bow ...
tophat alignment bowtie rna-seq written 4.4 years ago by rm160

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