User: Curiosity

gravatar for Curiosity
Curiosity120
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120
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http://interpretdata.b...
Last seen:
8 years, 11 months ago
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9 years ago
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Programmer, Bio-entrepreneur

Posts by Curiosity

<prev • 15 results • page 2 of 2 • next >
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How To Plot Splicing Map
... I'm aware of density plots around TSS. These are very straight forward. However I am trying to to do the same, by using alternative exons instead of TSS/promoters. It seems very tricky, especially because of variable length of exons. Does any one know how to plot these profiles ? Ex: http://www.nat ...
written 9.0 years ago by Curiosity120 • updated 9.0 years ago by polarise380
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Comment: C: What Is A Whole Genome Background In Analysis Of Motifs Or Peaks?
... Thanx Larry. So picking 5000 targets and 40k background sequences is normal ? I used homer for this analysis. ...
written 9.0 years ago by Curiosity120
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What Is A Whole Genome Background In Analysis Of Motifs Or Peaks?
... Why does peak analysis or motif analysis most often use a whole genome background, when they do not have any control to compare? When I run 20k peaks for motif analysis. I picked 5000 target sequences and 40k background sequences. Why are the numbers different? Does it affect p-values (% of target ...
genome sequence motif written 9.0 years ago by Curiosity120 • updated 9.0 years ago by Ian5.7k
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Extracting A Rs* Genotype Using Vcf Tools
... Does any one know how to extract a SNP genotype from 1000 Genome data easily? VCF tools of GATK? ...
gatk written 9.1 years ago by Curiosity120 • updated 9.1 years ago by lh332k
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Comment: A: Prioritizing Tfbs Snps
... What If we already have a TFBS (ChIP-Seq) dataset ? Can I use GATK ? ...
written 9.1 years ago by Curiosity120

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