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questions
0
votes
0
replies
401
views
Calculating Ne (effective population size) for big data
data
Ne
big
13 months ago by
Emy
▴ 50
0
votes
1
reply
506
views
FST and HWE
hwe
fst
updated 15 months ago by
barslmn
★ 2.1k • written 15 months ago by
Emy
▴ 50
5
votes
3
replies
868
views
what is the difference between QTL heritability and heritability?
heritability
QTL
updated 18 months ago by
Asaf
10k • written 18 months ago by
Emy
▴ 50
0
votes
1
reply
422
views
why assortative mating can cause bias in GWAS results?
assortative
SNPchip
GWAS
mating
updated 23 months ago by
gubrins
▴ 290 • written 23 months ago by
Emy
▴ 50
1
vote
2
replies
401
views
What factors affect p value in GWAS ?
SNPchip
GWAS
p-value
written 2.1 years ago by
Emy
▴ 50
1
vote
0
replies
399
views
How can I draw manhattan plot by ROH value?
roh
plink
2.1 years ago by
Emy
▴ 50
0
votes
0
replies
307
views
How to calculate recombination frequency from genotype file?
recombination
2.1 years ago by
Emy
▴ 50
0
votes
0
replies
405
views
Plink and criteria
plink
2.1 years ago by
Emy
▴ 50
6
votes
2
replies
1.8k
views
what is log –log10 in GWAS ?
GWAS
2.1 years ago by
Emy
▴ 50
0
votes
4
replies
1.1k
views
GWAS and Hetrozygosity
SNPchip
GWAS
Heterozygosity
updated 2.1 years ago by
seidel
11k • written 2.1 years ago by
Emy
▴ 50
0
votes
1
reply
720
views
How to describe bi-plot PCA figure?
PCA
updated 2.3 years ago by
Mensur Dlakic
★ 26k • written 2.3 years ago by
Emy
▴ 50
2
votes
2
replies
1.5k
views
How to convert genotypes "1, 2" to "0,1, 2"?
snp
plink
updated 6 months ago by
karthivalarmathi99
▴ 10 • written 2.7 years ago by
Emy
▴ 50
3
votes
1
reply
5.4k
views
What is the difference between covariate with fixed effect and random effect?
covariate
mlm
componentsvariance
gwas
updated 2.8 years ago by
atorreso
▴ 130 • written 2.8 years ago by
Emy
▴ 50
5
votes
3
replies
870
views
GCTA run GREML analysis ( Error (invalid option "--qcovr.txt"))
GCTA
updated 2.8 years ago by
Kevin Blighe
87k • written 2.8 years ago by
Emy
▴ 50
3
votes
3
replies
2.4k
views
GCTA make GRM error contains illegal chr number
plink
GCTA
2.8 years ago by
Emy
▴ 50
0
votes
0
replies
755
views
Error: Merging ped and map files by PLINK
SNP
plink
merge
3.2 years ago by
Emy
▴ 50
0
votes
3
replies
890
views
Can we draw PCA with genotyping data align with geographic data for two different populations in different locations?
SNP
ChIP-Seq
genome
3.9 years ago by
Emy
▴ 50
0
votes
2
replies
2.6k
views
How can I get the sheep chromosomes centromere position and chromosomes length???
genome
updated 3.9 years ago by
Alex Reynolds
35k • written 7.8 years ago by
Emy
▴ 50
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