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Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)
ChIP-Seq hypergeometic test statistics
2.9 years ago by guixien • 0
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Profile HMM to find sequence motif using Baum-Welch instead of using a given multiple sequence alignment?
HMM hidden markov model motif transcription factor
3.4 years ago by guixien • 0
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Comment: C: What's the point in estimating the background distribution in probabilstic model
3.5 years ago by guixien • 0
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What's the point in estimating the background distribution in probabilstic models of motif finding such as MEME (mixture model with EM) or some HMM?
motif sequence analysis sequence homology
updated 3.5 years ago by ★ 23k • written 3.5 years ago by • 0
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MEME-chip: selecting the input sequences to be equal length
MEME-chip X-seq ChIP-Seq MEME
4.1 years ago by guixien • 0
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