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4
votes
6
replies
3.1k
views
ReactomePA enrichPathway function
ReactomePA enrichPathway
updated 16 months ago by • 0 • written 4.0 years ago by ▴ 380
13
votes
6
replies
1.0k
views
6 follow
Is training data used exclusively in machine learning
learning machine
updated 2.9 years ago by 87k • written 2.9 years ago by ▴ 380
2
votes
2
replies
2.7k
views
Scatter plot of DEG in R
R RNA-seq Bioconductor DEG
3.0 years ago by ATCG ▴ 380
8
votes
5
replies
3.9k
views
Can someone explain in detail the meaning of a gseaplot in GSEA
gseaplot
updated 3.1 years ago by ▴ 270 • written 4.0 years ago by ▴ 380
1
vote
1
reply
805
views
RNA-seq batches across different tissues
RNA-Seq Normalization
3.4 years ago by ATCG ▴ 380
0
votes
0
replies
606
views
RAP-seq datasets but no corresponding RNA-seq
RNA-Seq TRAP-Seq Translation Transcription
3.4 years ago by ATCG ▴ 380
0
votes
0
replies
782
views
Normalization for RNA-Seq samples
RNA-Seq Tissue specific Transcriptome
3.5 years ago by ATCG ▴ 380
1
vote
2
replies
878
views
help clarify ways to measure coverage in RNA-Seq libraries
RNA-Seq coverage
3.7 years ago by ATCG ▴ 380
4
votes
6
replies
3.0k
views
Understanding the colData in DESeq2
DEseq2 ColData LFC
3.7 years ago by ATCG ▴ 380
0
votes
2
replies
795
views
over-representation of sequences that map to "Drosophila melanogaster signal recognition particle
RNA-Seq TRAP-Seq FastQC SRP representation
3.7 years ago by ATCG ▴ 380
1
vote
3
replies
1.1k
views
Differential gene expression using DESeq2 on Ribo-Seq data
DESeq2 Ribo-Seq Differential translation
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 380
1
vote
1
reply
1.0k
views
Ribo-seq data analysis using an RNA-Seq analysis pipeline
RNA-Seq Ribo-Seq TRAP-Seq
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by ▴ 380
0
votes
0
replies
681
views
Protein annotation tool
Proteins
3.8 years ago by ATCG ▴ 380
7
votes
8
replies
1.1k
views
Change the field separator
R awk field separator
updated 3.8 years ago by ★ 1.3k • written 3.8 years ago by ▴ 380
2
votes
4
replies
1.7k
views
Is it appropriate to apply quantile normalization on RNA-Seq before computing the Pearson correlation?
RNA-Seq Quantile Normalization Correlation
3.9 years ago by ATCG ▴ 380
4
votes
2
replies
3.3k
views
Is it possible to run DESeq with only two replicates in one group?
RNA-Seq DESeq2 Replicates
updated 3.9 years ago by 81k • written 3.9 years ago by ▴ 380
0
votes
10
replies
1.1k
views
Differential gene expression analysis
RNA-Seq DESeq2
updated 3.9 years ago by 14k • written 3.9 years ago by ▴ 380
3
votes
5
replies
1.9k
views
How to estimate the inter sample and inter replicate correlation coefficient?
RNA-Seq Replicates R2 Correlation coefficients
4.0 years ago by ATCG ▴ 380
5
votes
2
replies
1.1k
views
How to subset DESeq2 results
DESEq2 GSEA
updated 4.0 years ago by 13k • written 4.0 years ago by ▴ 380
2
votes
4
replies
1.9k
views
Gene set enrichment analysis input data
GSE DESeq2
4.0 years ago by ATCG ▴ 380
1
vote
1
reply
1.1k
views
Infer strandedness of my single-end RNA-Seq data
RNA-Seq HISAT2 strandedness
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 380
17
votes
26
replies
2.3k
views
File conversion in bash, discrepancy in number of lines after conversion.
bash
updated 13 months ago by 43k • written 4.0 years ago by ▴ 380
1
vote
6
replies
869
views
Filter fastq files
Fastq trimmomatic
updated 4.0 years ago by 100k • written 4.0 years ago by ▴ 380
0
votes
2
replies
1.2k
views
over-represented is not removed after trimmomatic
trimmomatic fastqc
4.0 years ago by ATCG ▴ 380
2
votes
2
replies
925
views
Is indexing a genome the same as annotating a genome?
samtools index genome indexing
4.0 years ago by ATCG ▴ 380
2
votes
4
replies
5.4k
views
DESeq2 Error: package or namespace load failed for 'DESeq2'
RNA-Seq DESeq2 image not found
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 380
2
votes
2
replies
3.8k
views
Do illumina instruments generate four fastq files per sample?
Fasq Illumina lane
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 380
2
votes
4
replies
914
views
How to recognize single-end fastq files
RNA-Seq Fastq single-end
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 380
5
votes
2
replies
1.5k
views
Pathway vs Network
Pathway Networks RNA-Seq
updated 4.0 years ago by 19k • written 4.0 years ago by ▴ 380
8
votes
8
replies
1.5k
views
Drosophila reference genomes
genome Drosophila Model organisms Annotation
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 380
0
votes
2
replies
4.2k
views
Download NCBI GEO dataset
RNA-Seq GEO GSE
updated 4.0 years ago by ▴ 560 • written 4.0 years ago by ▴ 380
0
votes
3
replies
1.1k
views
Extracting related sequences from a FASTA file
Sequence comparizon Data mining kmer
updated 5.2 years ago by 20 • written 5.4 years ago by ▴ 380
1
vote
3
replies
3.9k
views
Filter out related individuals from a vcf file using Plink or Hail
Hail Plink VCF
updated 5.4 years ago by 11k • written 6.4 years ago by ▴ 380
4
votes
6
replies
2.2k
views
Bulk primer design
primers bulk FASTA kmer
updated 5.4 years ago by 161k • written 5.4 years ago by ▴ 380
1
vote
4
replies
1.2k
views
where to keep scripts for new software
$PATH Unix install
5.6 years ago by ATCG ▴ 380
4
votes
3
replies
2.5k
views
GMAP download page
RNA-Seq GMAP PacBio
5.6 years ago by ATCG ▴ 380
5
votes
8
replies
2.8k
views
differential gene expression analysis
confounders RNA-Seq Limma EdgeR Regression
6.0 years ago by ATCG ▴ 380
0
votes
2
replies
933
views
number of individuals in each genotype group for a particular SNP
plink SNP
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 380
1
vote
1
reply
1.4k
views
missing a sample and individual attributes in GTEX Adipose- Subcutaneous(v7)
RNA-Seq GTEx Adipose
6.2 years ago by ATCG ▴ 380
0
votes
1
reply
1.7k
views
remove lowly expressed genes by selecting genes that had FPKM > 0
RNA-Seq filter
6.2 years ago by ATCG ▴ 380
0
votes
1
reply
2.1k
views
PCA from genotype data using the --pca option in plink2
pca plink2 LD pruning PCA
6.3 years ago by ATCG ▴ 380
2
votes
2
replies
1.7k
views
extract a chromosome region from vcf.c1.GRU.tar
vcf .tar
6.3 years ago by ATCG ▴ 380
0
votes
5
replies
1.3k
views
available subcutaneous adipose RNA-seq
RNA-Seq Subcutaneous adipose
updated 6.3 years ago by ★ 4.0k • written 6.3 years ago by ▴ 380
1
vote
1
reply
1.6k
views
bash loop to align 366 RNAseq samples in individual folders
RNA-Seq Bash Unix STAR alignment
6.3 years ago by ATCG ▴ 380
1
vote
3
replies
2.4k
views
vcf file filter
filter vcf SNPs minor allele homozygotes
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 380
1
vote
1
reply
2.1k
views
FastQTL-Finding a candidate QTL per phenotype
FastQTL
6.6 years ago by ATCG ▴ 380
0
votes
0
replies
1.2k
views
veqtl-mapper in a replication study --perm option
veqtl-mapper permutations replication LD
6.6 years ago by ATCG ▴ 380
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva microarrays batch-effect
updated 6 days ago by 43k • written 6.8 years ago by ▴ 380
1
vote
1
reply
1.6k
views
sequencing QC metrics from kallisto
kallisto
7.1 years ago by ATCG ▴ 380
0
votes
0
replies
2.1k
views
HOMER: how to plot xy scatter plots
ChIP-Seq HOMER XY scatter plot
7.4 years ago by ATCG ▴ 380
52 results • Page 1 of 2
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