User: carlos_marchi

gravatar for carlos_marchi
Reputation:
40
Status:
New User
Location:
Brazil, Sorocaba, UFABC
Last seen:
2 weeks, 3 days ago
Joined:
3 years, 4 months ago
Email:
c************@yahoo.com.br

Posts by carlos_marchi

<prev • 25 results • page 1 of 3 • next >
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How to retrieve protein sequence data for humano in UniProt?
... Hi, I tried to retrieve protein sequence data from UniProt site, however, I haven't downloaded the data because is huge files ( about 130GB). I suppose, there are all species in that file. Is there a manner to download just protein sequence data from UniProt specific for human? Thank you ver ...
protein sequence protein uniprot written 7 weeks ago by carlos_marchi40 • updated 7 weeks ago by a.zielezinski8.9k
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How to get the list of human domains in the PFAM database?
... Hi, I downloaded the Pfam-A.full in the PFAM database FTP wich contains the entire information about domains. However, I'd like to know whether there is possible two retrive a file with just human domains or get human domains in the Pfam-A.full. Thank you very much ...
human domain pfam written 10 weeks ago by carlos_marchi40 • updated 10 weeks ago by h.mon27k
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Answer: A: is there a method two compare EC similarity?
... I found a solution... First, you have to create a matrix with all enzyme classes where each cell corresponds to an enzyme class. You can download the enzyme classes in the Enzyme Database: [enter link description here][1] To compare two EC numbers, you have to convert the EC number to a bit array ...
written 10 weeks ago by carlos_marchi40
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is there a method two compare EC similarity?
... Hi there, Given two proteins with their EC Numbers, I'd like to know if the EC number are similarity. Is there a method, web service or python implementation for calculate ec similarity? Thank you very much ...
ecc number drug enzyme written 10 weeks ago by carlos_marchi40
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Comment: C: Which should items consider to creste a dru-drug-gene interaction network?
... Hi dselleno! That's my email: carlos_marchi@yahoo.com.br Thank you very much! ...
written 3 months ago by carlos_marchi40
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How to calculate synergy score between two drugs?
... Hi, I'm curious about the calculation of drug synergy, I'm novice in these field. I would like to know how to calculate the synergy score between two drugs using one of these methods: Loewe Additivity, Highest Single Agent, Response Additivity, Bliss Independence or ZIP. Is there any implementation ...
drug drug synergy combination index written 4 months ago by carlos_marchi40
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Comment: C: Which are the protein classes
... Olá Kevin! Eu vi no site do drugbank uma classificação de proteínas alvos de drogas, podendo ser Target, Enzyme, Carrie e Transporter. Em alguns artigos que li, eles utilizaram alvos de drogas relacionadas a GPRC, Transcriptor Factor, Nuclear receptor, dentre outros. Gostaria de saber se há uma list ...
written 5 months ago by carlos_marchi40
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Comment: C: Which are the protein classes
... Hi Kevin! In fact, I'd like to know if there is a functional classification of proteins that is used in any biological protein databases. For example, DrugBank uses 4 classes of drug targets: Enzymes, Transporters, Carries and Receptors. However, I read in some articles using other classes, includin ...
written 5 months ago by carlos_marchi40
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Which are the protein classes
... Hi, I'd like to know if there is a list of universal protein classes and there is a protein database in which each one has its corresponding protein class. I haven't found this classification in Uniprot database, for example. Here is an example of protein classes that I find: https://www.proteina ...
proteome database protein written 5 months ago by carlos_marchi40 • updated 4 months ago by Elisabeth Gasteiger1.6k
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Which should items consider to creste a dru-drug-gene interaction network?
... Hi, Assuming there is a list of human genes. I would like to know what to consider creating a drug-drug interaction network where only drug selected based on their correspondence to the gene target. Furthermore, what to consider in the relationships among the nodes (drugs) in the Network? Would i ...
ddg network drug written 7 months ago by carlos_marchi40 • updated 3 months ago by dselleno0

Latest awards to carlos_marchi

Scholar 7 weeks ago, created an answer that has been accepted. For A: Data integration between gene expression - RNAseq and DNA methylation - Illumina
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Data integration between gene expression - RNAseq and DNA methylation - Illumina 450k
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Doubts about TCGA DNA Methylation samples
Popular Question 3.0 years ago, created a question with more than 1,000 views. For get correlation matrix from principal component analysis in python
Scholar 3.2 years ago, created an answer that has been accepted. For A: Data integration between gene expression - RNAseq and DNA methylation - Illumina
Scholar 3.3 years ago, created an answer that has been accepted. For A: Data integration between gene expression - RNAseq and DNA methylation - Illumina

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