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6
votes
8
replies
5.0k
views
Modeling Chip-Seq Background Using Edger'S Glm Functionality?
chip-seq edger
updated 3.0 years ago by 82k • written 11.7 years ago by ★ 3.6k
2
votes
0
replies
59k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 11.5 years ago by ★ 3.6k
2
votes
0
replies
59k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 11.5 years ago by ★ 3.6k
0
votes
1
reply
59k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 11.5 years ago by ★ 3.6k
0
votes
2
replies
59k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 11.5 years ago by ★ 3.6k
0
votes
0
replies
59k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 43k • written 11.5 years ago by ★ 3.6k
11
votes
4
replies
94k
views
Answer: A: Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
updated 4.3 years ago by 43k • written 12.7 years ago by ★ 3.6k
1
vote
1
reply
3.2k
views
Answer: A: Perl Option For Mir Target Prediction?
updated 4.6 years ago by 43k • written 13.3 years ago by ★ 3.6k
0
votes
0
replies
24k
views
Comment: C: Processing Fastq Files In R/Bioconductor Without Reading Entire Files Into Memor
updated 4.6 years ago by 43k • written 13.5 years ago by ★ 3.6k
0
votes
0
replies
38k
views
Answer: A: Extracting Sequence From A 3Gb Fasta File
updated 5.6 years ago by 43k • written 12.9 years ago by ★ 3.6k
11
votes
17
replies
6.4k
views
How Can I Save Bioperl Sequence Nested Features In Genbank Or Embl Format?
bioperl sequence data
updated 5.6 years ago by 43k • written 14.0 years ago by ★ 3.6k
48
votes
14
replies
22k
views
9 follow
What'S The Best Way To View And Explore A Large Gene Ontology Dag?
gene graphs visualization
updated 5.9 years ago by • 0 • written 13.9 years ago by ★ 3.6k
11
votes
11
replies
8.1k
views
Chipseq Background Subtraction For Count-Based Differential Binding Methods?
chip-seq edger
updated 7.2 years ago by 20 • written 11.7 years ago by ★ 3.6k
8
votes
4
replies
2.2k
views
Good Pdf Viewers For Plots With Thousands Of Points?
visualization
updated 2.3 years ago by 43k • written 10.4 years ago by ★ 3.6k
4
votes
5
replies
10k
views
Gene-Level Analysis Of Rna-Seq Matched Pairs Of Samples?
rna-seq
updated 7.4 years ago by 20 • written 11.8 years ago by ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: Weird 1kb-periodic artifact in ChIP-Seq data (including input)
7.5 years ago by Ryan Thompson ★ 3.6k
4
votes
7
replies
2.2k
views
Weird 1kb-periodic artifact in ChIP-Seq data (including input)
ChIP-Seq
7.5 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: Weird 1kb-periodic artifact in ChIP-Seq data (including input)
7.5 years ago by Ryan Thompson ★ 3.6k
1
vote
1
reply
2.2k
views
Comment: C: Weird 1kb-periodic artifact in ChIP-Seq data (including input)
7.5 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
4.5k
views
Comment: C: Best aligner for reporting all exact matches of multi-mapping short reads?
7.8 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
4.5k
views
Comment: C: Best aligner for reporting all exact matches of multi-mapping short reads?
7.9 years ago by Ryan Thompson ★ 3.6k
1
vote
0
replies
4.5k
views
Comment: C: Best aligner for reporting all exact matches of multi-mapping short reads?
7.9 years ago by Ryan Thompson ★ 3.6k
7
votes
6
replies
4.5k
views
Best aligner for reporting all exact matches of multi-mapping short reads?
miRNA alignment speed bowtie2
7.9 years ago by Ryan Thompson ★ 3.6k
2
votes
1
reply
9.2k
views
Answer: A: TPM for ChIP-seq normalization
7.9 years ago by Ryan Thompson ★ 3.6k
2
votes
1
reply
2.8k
views
Is there a tool to convert soft clipping to hard clipping in bam files?
bam clipping
7.9 years ago by Ryan Thompson ★ 3.6k
11
votes
4
replies
3.8k
views
What Coordinate System Does Biomart Use?
biomart coordinates
updated 8.5 years ago by 20 • written 13.1 years ago by ★ 3.6k
4
votes
6
replies
7.2k
views
Cuffdiff Is Taking Forever. Can I Parallelize It?
cufflinks cuffdiff parallel
updated 8.7 years ago by 20 • written 12.7 years ago by ★ 3.6k
0
votes
0
replies
25k
views
Answer: Answer: How to determine reference genome that was used for alignment given BAM with obs
updated 16 months ago by 43k • written 8.9 years ago by ★ 3.6k
0
votes
1
reply
3.1k
views
Comment: C: How can I find the correct transformation for a continuous covariate in a gene e
8.9 years ago by Ryan Thompson ★ 3.6k
4
votes
3
replies
3.1k
views
How can I find the correct transformation for a continuous covariate in a gene expression linear model?
RNA-Seq linear-modeling covariates
8.9 years ago by Ryan Thompson ★ 3.6k
3
votes
4
replies
3.3k
views
Does It Makes Sense To Assemble All My Rna-Seq Samples As Though They Were One?
cufflinks transcriptome transcript assembly
updated 9.0 years ago by 20 • written 12.1 years ago by ★ 3.6k
18
votes
17
replies
24k
views
Processing Fastq Files In R/Bioconductor Without Reading Entire Files Into Memory?
r bioconductor fastq memory
9.1 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
9.0k
views
Comment: C: How to get all start and end positions of promoters in All the human genome ?
9.1 years ago by Ryan Thompson ★ 3.6k
3
votes
4
replies
5.2k
views
Can I Pre-Build The Shared Transcriptome Index For A Series Of Tophat Runs?
tophat rna-seq
updated 9.3 years ago by ▴ 90 • written 11.9 years ago by ★ 3.6k
68
votes
23
replies
36k
views
16 follow
How Do I Do Simple Go Term Lookup Given A Gene (Or Mrna) Identifier?
gene annotation database
updated 3.1 years ago by 43k • written 13.9 years ago by ★ 3.6k
31
votes
2
replies
15k
views
Using A Variable As A Blocking Factor Vs Putting It As A Term In The Model Formula?
rna-seq limma edger deseq
updated 9.9 years ago by ▴ 110 • written 11.5 years ago by ★ 3.6k
2
votes
2
replies
5.6k
views
Where Do I Get A Gtf File With Proper Gene Ids For Read Counting?
rna-seq annotation
updated 10.2 years ago by 8.2k • written 11.5 years ago by ★ 3.6k
0
votes
2
replies
2.4k
views
What Is The Proper Way To Say "We Calculated Fdr Values From P-Values" In A Paper?
p-value
updated 10.3 years ago by 8.2k • written 10.3 years ago by ★ 3.6k
0
votes
0
replies
5.1k
views
Comment: C: Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
10.5 years ago by Ryan Thompson ★ 3.6k
4
votes
6
replies
5.1k
views
Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
paired short short aligner
updated 10.5 years ago by ★ 2.6k • written 13.2 years ago by ★ 3.6k
0
votes
0
replies
9.1k
views
Comment: C: What Are Numbers Every Bioinformatician Should Know?
10.7 years ago by Ryan Thompson ★ 3.6k
1
vote
2
replies
9.1k
views
Answer: A: What Are Numbers Every Bioinformatician Should Know?
10.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
3.1k
views
Comment: C: Windows-Mac-Linux Compatible Filesystem For 3To External Drive
10.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
4.0k
views
Answer: A: Is There A Package To Map Primer Pair On Genome In R/Bioconductor?
10.7 years ago by Ryan Thompson ★ 3.6k
0
votes
0
replies
2.4k
views
Comment: C: Is There A Way To Use Anova() With Lm.Fit()
10.7 years ago by Ryan Thompson ★ 3.6k
1
vote
1
reply
5.4k
views
Comment: C: Programming Challenge: Divide The Human Genome Among X Cores, Taking Into Accoun
10.7 years ago by Ryan Thompson ★ 3.6k
14
votes
4
replies
8.9k
views
K-Mer Correction In Rna-Seq Data For Transcriptome Assembly?
rna transcriptome next-gen sequencing assembly
updated 10.8 years ago by ▴ 410 • written 12.5 years ago by ★ 3.6k
2
votes
0
replies
3.3k
views
Comment: C: Biomart, Sort Genes After Their Location On The Genome
10.8 years ago by Ryan Thompson ★ 3.6k
0
votes
1
reply
11k
views
Comment: C: How Can I Accurately Identify Mirna Sequences From Small Rna Seq Results
10.8 years ago by Ryan Thompson ★ 3.6k
13
votes
8
replies
11k
views
How Can I Accurately Identify Mirna Sequences From Small Rna Seq Results
mirna rna-seq alignment r
updated 10.8 years ago by 4.8k • written 10.8 years ago by ★ 3.6k
198 results • Page 1 of 4
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