User: Tonig

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Tonig410
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Bioinformatician changing from proteins to genes and epigenetic world

Posts by Tonig

<prev • 35 results • page 1 of 4 • next >
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Synthetic Lethality In Networks
... Hi all, I have a network built using the list of genes coming from a microarray experiemnt, i used Genemania in order to map interactions from co-expression databases, and now I want to know which genes could involved in synthetic lethality. My approach was the next: I used igraph package to loa ...
network bioconductor written 6.5 years ago by Tonig410 • updated 11 days ago by Biostar ♦♦ 20
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Comment: C: Monoallelic Expressed Genes List
... Thanks Obi, i'll try with this one. At least they provide a list, i'll work with this source ...
written 6.6 years ago by Tonig410
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Comment: C: Mapping Protein Domains To Exons
... But the pfam information is a protein sequence, i.e aminoacids, so how doyou import this with Genomic ranges and then overlap with the exons? Because, what you are trying to get is the genomic coordinates of this domains ...
written 6.6 years ago by Tonig410
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Comment: C: Genomic Positions Of Protein Domains
... Sorry, probably it is a silly question, but I don't get how do you builkd the translated protein using knownGene. Moreover, when you say align the SWP entry and the reconstituted, you are talking about aminoacids, isn't it? So, my problem is that i can follow the procedure, because you are aligning ...
written 6.6 years ago by Tonig410
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Plotting Exons Of A Transcript Using Bioconductor Genomegraphs
... Hi, I was looking the list but there was no response to my questions: How do I plot the exons of a specific transcript of my gene in question using Bioconductor Genographs package? library(GenomeGraphs) library(biomaRt) mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") #g ...
genome bioconductor exon visualization transcript written 6.6 years ago by Tonig410 • updated 2.6 years ago by Biostar ♦♦ 20
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Graphic Of Genomic Positions Of Protein Domains
... I know the part of this questions was solved in Biostar here http://biostar.stackexchange.com/questions/3589/genomic-positions-of-protein-domains http://biostar.stackexchange.com/questions/6709/easy-way-to-map-cds-coordinates-to-genomic-coordinates http://biostar.stackexchange.com/questions/159 ...
protein exon visualization clustalw written 6.6 years ago by Tonig410 • updated 6.5 years ago by Zev.Kronenberg11k
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Comment: C: Monoallelic Expressed Genes List
... Let me use this:"When only one allele of a gene is actively transcribed, gene expression is termed monoallelic" I am interested in Human ...
written 6.6 years ago by Tonig410
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Monoallelic Expressed Genes List
... Hi everybody, Does any one of you where to find a list of mono allelic non imprinted genes? I'm collecting bibliography but all are single experiments with a few genes in each of the papers. It could be great if I find a list or database with a group of them Thanks in advance ...
gene database allele written 6.6 years ago by Tonig410 • updated 6.6 years ago by Obi Griffith17k
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Comment: C: Database Of Tumor Suppressors And/Or Oncogenes
... Anyone knows how to get this list of tumour suppressor genes from NCI Cancer gene index? I've been reading and trying but the interface of searching is not really firendly ...
written 6.6 years ago by Tonig410
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Comment: C: Heatmaps In R With Huge Data
... I am on Linux and 32-bit R, I have 16 nodes and 64 RAM gb's ...
written 6.7 years ago by Tonig410

Latest awards to Tonig

Student 6.5 years ago, asked a question with at least 3 up-votes. For Synthetic Lethality In Networks
Popular Question 6.6 years ago, created a question with more than 1,000 views. For Plotting Exons Of A Transcript Using Bioconductor Genomegraphs
Student 6.6 years ago, asked a question with at least 3 up-votes. For Plotting Exons Of A Transcript Using Bioconductor Genomegraphs
Popular Question 6.7 years ago, created a question with more than 1,000 views. For Heatmaps In R With Huge Data
Appreciated 6.7 years ago, created a post with more than 5 votes. For Heatmaps In R With Huge Data
Student 6.7 years ago, asked a question with at least 3 up-votes. For Heatmaps In R With Huge Data
Good Question 6.7 years ago, asked a question that was upvoted at least 5 times. For Heatmaps In R With Huge Data
Popular Question 7.0 years ago, created a question with more than 1,000 views. For Gene Lists Using Principal Component Analysis In Microarray Gene Expression

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