Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
5
votes
5
replies
676
views
Convert genomic files from known Gigabases(# of bases) to gigabytes
gigabases gigabytes genomics
updated 14 months ago by 141k • written 14 months ago by ▴ 520
1
vote
1
reply
479
views
gigabases to gigabytes for different assays?
gigabases
updated 16 months ago by 141k • written 16 months ago by ▴ 520
0
votes
2
replies
562
views
Human cell atlas TCR analysis
TCR cell single
18 months ago by datanerd ▴ 520
0
votes
0
replies
330
views
TCR data from HCA and ImmuneCode
TCR
19 months ago by datanerd ▴ 520
0
votes
0
replies
404
views
TCGA data downloaded from GDC
TCGA
22 months ago by datanerd ▴ 520
0
votes
1
reply
500
views
gnomad meta data?
gnomad
updated 2.0 years ago by ▴ 740 • written 2.0 years ago by ▴ 520
0
votes
0
replies
332
views
GWAS data catalogs?
GWAS
2.2 years ago by datanerd ▴ 520
4
votes
2
replies
571
views
Reference datasets for alignment?
reference
updated 2.2 years ago by 141k • written 2.2 years ago by ▴ 520
0
votes
0
replies
380
views
Preferred analysis pipeline for clinical WGS analysis and annotation?
calling variant clinical annotation WGS
2.3 years ago by datanerd ▴ 520
14
votes
10
replies
2.1k
views
How can NIH SRA data be more useful?
SRA resource genomics opendata
updated 2.3 years ago by 22k • written 2.4 years ago by ▴ 520
1
vote
1
reply
1.9k
views
SNP2HLA merge dosage files with overlaping samples
SNP2HLA SNP HLA DOSAGE
updated 3.7 years ago by 87k • written 7.2 years ago by ▴ 520
1
vote
3
replies
2.5k
views
Need Cluster of cluster analysis steps
CoC cluster of cluster Integration clustering
updated 4.3 years ago by 20 • written 8.1 years ago by ▴ 520
0
votes
2
replies
2.8k
views
Duplicates in plink files (same position, same ref allele but different A1 allele)
plink SNPchip GWAS
updated 2.6 years ago by 43k • written 7.8 years ago by ▴ 520
1
vote
1
reply
1.7k
views
Conditional analysis on dosage file -what program to use?
conditional-analysis plink GWAS association
updated 6.5 years ago by ▴ 280 • written 6.7 years ago by ▴ 520
0
votes
0
replies
2.9k
views
shapeit2 pre-phasing error- empty hap file
GWAS shapeit2 pre-phasing
updated 7.6 years ago by 20 • written 7.8 years ago by ▴ 520
0
votes
2
replies
2.0k
views
GWAS from case/control + family based WGS data -how to effectively use together
GWAS familial variant filter
updated 7.8 years ago by ★ 4.0k • written 7.8 years ago by ▴ 520
0
votes
1
reply
1.3k
views
Are mapped reads between 2 regions common?
rnaseq unique reads
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by ▴ 520
0
votes
0
replies
2.0k
views
Composite risk score in GWAS using snp weights
GWAS SNP SNP-weights Riskscore
7.8 years ago by datanerd ▴ 520
0
votes
3
replies
1.9k
views
genome browser custom track bigwig upload problem with localhost
bigwig genomeBrowser customtrack
7.9 years ago by datanerd ▴ 520
0
votes
0
replies
2.0k
views
miRNA target enrichment analysis tool?
mirna-target mirna enrichment
8.0 years ago by datanerd ▴ 520
5
votes
4
replies
1.4k
views
how to identify if RNAseq data is from same patient
RNAseq Variants
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 520
0
votes
1
reply
2.3k
views
EdgeR or Ttest/ANOVA for non normal RNAseq data?
rnaseq exacttest EdgeR Ttest
8.1 years ago by datanerd ▴ 520
2
votes
10
replies
2.3k
views
How to generate a similar heatmap?
heatmap ClusterofCluster integrative heatmap
updated 8.1 years ago by 104k • written 8.1 years ago by ▴ 520
1
vote
0
replies
1.7k
views
small rnaseq data quality question - before using mirdeep2
mir-seq small Rna seq fastqc mirdeep
8.1 years ago by datanerd ▴ 520
1
vote
0
replies
1.4k
views
Anyone worked with PARADIGM for integrative data analysis?
genomics data-integration PARADIGM
8.1 years ago by datanerd ▴ 520
0
votes
8
replies
3.8k
views
mirDeep2 input files- where to download?
miRNAseq miRNA-sequences mirdeep
updated 8.1 years ago by ★ 2.7k • written 8.1 years ago by ▴ 520
0
votes
4
replies
2.1k
views
Analyzing proteomics data
proteomics Disease-specific
updated 22 months ago by • 0 • written 8.2 years ago by ▴ 520
0
votes
4
replies
1.6k
views
feature selection for specific disease groups
feature-selection gene-expression
updated 2.6 years ago by 43k • written 8.2 years ago by ▴ 520
0
votes
1
reply
2.3k
views
Illumina small RNAseq analysis pipeline?
miRNAseq Small rnaseq Analysis pipeline
8.2 years ago by datanerd ▴ 520
2
votes
6
replies
3.4k
views
Circos Gd Module Error
updated 8.4 years ago by 20 • written 11.2 years ago by ▴ 520
0
votes
0
replies
1.2k
views
RNAseq paper with good data overview (quality, stats) figures?
RNA-Seq quality-control visualization StatGraphs
updated 20 months ago by 43k • written 8.4 years ago by ▴ 520
0
votes
0
replies
1.4k
views
Looking for Systems biology/Data integration exemplar paper (maybe TGCA kinda analysis)
nextgen systemsbiology Data-integration
updated 2.6 years ago by 43k • written 8.9 years ago by ▴ 520
1
vote
2
replies
1.6k
views
Taqman miRNA cards normalization
mirna normalization controlMirna Taqmancards
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 520
0
votes
1
reply
1.1k
views
Transcripts size range in whole human muscle transcriptome
transcritome
updated 8.5 years ago by 35k • written 8.5 years ago by ▴ 520
4
votes
6
replies
3.7k
views
Illumina hiseq and pacbio isoseq data on same set of samples- combined analysis help?
RNA-Seq pacbio-isoseq hiseq
updated 19 months ago by 43k • written 8.6 years ago by ▴ 520
1
vote
3
replies
2.0k
views
integrated Network analysis using WGCNA - queries
network-analysis mirna-mrna wgcna
updated 19 months ago by 43k • written 8.7 years ago by ▴ 520
0
votes
2
replies
2.3k
views
Ribozero or polyA? Cant decide
ribozero rnaseq sequencing polyA
updated 3.0 years ago by 43k • written 8.8 years ago by ▴ 520
4
votes
5
replies
4.4k
views
Output from Trimmomatic paired end data- use the paired survived output?
trimmomatic trimming RNA-Seq
updated 18 months ago by 43k • written 8.8 years ago by ▴ 520
6
votes
6
replies
2.9k
views
Gene expression differences- network or pathway analysis
microarray gene expression network analysis
updated 17 months ago by 43k • written 8.8 years ago by ▴ 520
0
votes
3
replies
4.0k
views
SRA/ GEO format help
geo SRA RNAseq
updated 17 months ago by 43k • written 8.8 years ago by ▴ 520
6
votes
10
replies
4.8k
views
Microarray Time Series With No Replicates
r
updated 9.0 years ago by 8.2k • written 11.5 years ago by ▴ 520
0
votes
0
replies
1.0k
views
Affordable RNAseq library prep service center?
sequencing-service RNA-Seq
updated 2.6 years ago by 43k • written 9.1 years ago by ▴ 520
0
votes
0
replies
1.5k
views
Integrating RNAseq +Taqman miRNA + proteomics on same samples
proteogenomics RNA-Seq data-integration
updated 2.6 years ago by 43k • written 9.1 years ago by ▴ 520
0
votes
2
replies
1.7k
views
Transcription factor Visualization
factor TF visualization transcription
updated 24 months ago by 43k • written 9.2 years ago by ▴ 520
0
votes
3
replies
2.1k
views
unified genotyper targetfile
target_interval gatk unifiedgenotyper
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 520
3
votes
3
replies
2.2k
views
Illumina Gene expression array analysis
illumina microarray-analysis
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 520
0
votes
1
reply
1.4k
views
protein structure due to variant
start-codon protein-structure missense
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 520
1
vote
2
replies
3.7k
views
Family trio WES analysis
sequencing WES family-trio
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 520
0
votes
3
replies
2.0k
views
molecular weight of the truncated protein using a 2nd AUG downstream of the normal AUG
molecular-weight protein-truncation start-codon
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 520
1
vote
3
replies
3.0k
views
Tool for Time series data analysis
profile-clustering time-series
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 520
66 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6