User: tunl

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tunl40
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2 weeks, 2 days ago
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1 year, 4 months ago
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Posts by tunl

<prev • 67 results • page 1 of 7 • next >
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Comment: C: A question about differential expression analysis
... Thank you so much Devon! This is great info and advice! ...
written 24 days ago by tunl40
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A question about differential expression analysis
... My understanding is that most differential expression analysis tools for RNA-seq (bulk or single-cell) use negative binomial distribution, while some use the likelihood ratio test. Would it be possible to do a simple t-test for differential expression analysis of single-cell RNA-seq data? Thank y ...
single-cell rna-seq de analysis rna-seq written 26 days ago by tunl40 • updated 26 days ago by Devon Ryan73k
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Comment: C: Differential expression analysis tool for single cell RNA-seq data
... Thanks so much for the information! ...
written 4 weeks ago by tunl40
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Comment: C: Differential expression analysis tool for single cell RNA-seq data
... This is great! Thank you so much! Monocle vs. MAST, which one do you think is better? Thanks a lot! ...
written 4 weeks ago by tunl40
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Differential expression analysis tool for single cell RNA-seq data
... I am looking for the best available differential expression analysis tool for single cell RNA-seq data. From the literatures that did some comparisons, I found that MAST, ROTS, SCDE, DEGseq, D3E, and SAMseq seem to have good performance. Which one would you recommend based on your actual experience ...
single-cell rna-seq de analysis rna-seq written 5 weeks ago by tunl40 • updated 4 weeks ago by theobroma221.0k
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Comment: C: Length distribution of PacBio RNA-seq
... It used polyA RNA. Thanks a lot! ...
written 9 weeks ago by tunl40
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Comment: C: Length distribution of PacBio RNA-seq
... They have not been aligned yet. Thanks! ...
written 9 weeks ago by tunl40
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Comment: C: Length distribution of PacBio RNA-seq
... The sequence lengths range from < 100 to about 14k. It's a human sample. Thanks a lot! ...
written 9 weeks ago by tunl40
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Length distribution of PacBio RNA-seq
... I got a length distribution of a PacBio RNA-seq sample. There is a really tall peak (at least a magnitude higher than the majority) at a very narrow range of short lengths. I was wondering what might be the possible reasons for such a narrow tall peak at short lengths? Any advice would be greatly a ...
long reads rna-seq pacbio written 9 weeks ago by tunl40
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... For the "previously published MCF-7 Illumina dataset" (http://www.genomebiology.com/2014/15/1/R15), I can't seem to find the Illumina dataset from this paper (it mentioned "Additional file 1", but "Additional file 1" is actually a .xls file (a Table).) Any ideas? Thanks so much! ...
written 10 weeks ago by tunl40

Latest awards to tunl

Popular Question 8 months ago, created a question with more than 1,000 views. For Coverage-search vs. no coverage-search in running Tophat
Supporter 16 months ago, voted at least 25 times.

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