User: tunl

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tunl50
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Posts by tunl

<prev • 71 results • page 2 of 8 • next >
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Comment: C: Length distribution of PacBio RNA-seq
... They have not been aligned yet. Thanks! ...
written 9 months ago by tunl50
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Comment: C: Length distribution of PacBio RNA-seq
... The sequence lengths range from < 100 to about 14k. It's a human sample. Thanks a lot! ...
written 9 months ago by tunl50
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Length distribution of PacBio RNA-seq
... I got a length distribution of a PacBio RNA-seq sample. There is a really tall peak (at least a magnitude higher than the majority) at a very narrow range of short lengths. I was wondering what might be the possible reasons for such a narrow tall peak at short lengths? Any advice would be greatly a ...
long reads rna-seq pacbio written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... For the "previously published MCF-7 Illumina dataset" (http://www.genomebiology.com/2014/15/1/R15), I can't seem to find the Illumina dataset from this paper (it mentioned "Additional file 1", but "Additional file 1" is actually a .xls file (a Table).) Any ideas? Thanks so much! ...
written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... [DELETED, sorry I initially replied at a wrong place] ...
written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... This is great. Thanks a lot! I’ll take a look at them. ...
written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... Thank you so much for providing me the GSM datasets links! I really appreciate it. I looked into these datasets, but this paper only gave us the processed data (aligned reads for Illumina; error-corrected reads for PacBio). ...
written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... Thank you so much! This PacBio site looks great. I'll take a look. ...
written 9 months ago by tunl50
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Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
... Thank you so much for your suggestion! I looked at this posting, but the paper they mentioned there does not provide their long reads and short reads datasets for downloading. This seems to be the situation in many papers: they do not provide their datasets of long reads and short reads. So I was wo ...
written 9 months ago by tunl50
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Question about downloading RNA-seq long reads and short reads for the same sample
... We need to use RNA-seq long reads and short reads from the same sample to do some comparisons. I was wondering which websites may have both RNA-seq long reads (e.g. PacBio reads) and short reads for the same sample so we could download from there? Any advice would be greatly appreciated. Thank you ...
long reads rna-seq pacbio written 9 months ago by tunl50 • updated 9 months ago by magdoll10

Latest awards to tunl

Popular Question 7 months ago, created a question with more than 1,000 views. For Read pairing issues detected in Tophat run
Popular Question 15 months ago, created a question with more than 1,000 views. For Coverage-search vs. no coverage-search in running Tophat
Supporter 22 months ago, voted at least 25 times.

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