User: Giuseppe

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Giuseppe0
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Posts by Giuseppe

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Comment: C: trying to use gnu parallel and blast
... Thank you Pablo for sharing these resources. Parallelizing seems promising for someone, like me, that needs to reduce blastx processing time. I still have some doubts about the use of `-j` option. If I correctly understood, in the Ettemalab website `-j` option is used to run blastjobs in parallel, ...
written 6 months ago by Giuseppe0
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Comment: A: Convertion Of Gff3 To Gtf
... Hi, I'm still looking for a tool that allow to make a conversion from GenBank data to gtf for species that are not in ENSEMBL database. Any suggestions? ...
written 13 months ago by Giuseppe0
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Comment: A: Warning: no reference transcripts were found when map the reads to reference seq
... I have the same problem, did you find out how to solve the issue? ...
written 13 months ago by Giuseppe0
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gene expression level of a specific gene-set from cuffdiff output
... I’m using CummeRbound for analyzing Cuffdiff output. I need to focus the analysis of expression dynamics to a restricted gene set (roughly 50-100 genes). My aim would be to construct a heat map where is plotted the expression level of selected genes across the samples. From the manual they provide ...
cummerbund cuffdiff rna-seq written 3.0 years ago by Giuseppe0

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