User: justa.dk

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justa.dk0
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Posts by justa.dk

<prev • 6 results • page 1 of 1 • next >
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trackViewer for plotting .narrowPeak files from ENCODE
... Hi All, I would to use trackViewer package to plot signal intensitites from narrowPeak files from ENCODE. Is it possible? If so, how? ...
trackviewer chip-seq narrowpeak written 22 months ago by justa.dk0
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ELMER package errors
... Hello guys, I'm trying to preapre an input data for ELMER, using the recommended function data <- createMAE(exp = expr.df, + met = methylation.data.all, + met.platform = "450K", + genome = "hg19", + save = FALSE, ...
elmer multiassayexperiment written 22 months ago by justa.dk0
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normalized expression data from ENCODE cell lines
... Dear All, I would be interested in normalized expression values from RNAseq from ENCODE cell lines (ideally mapped to hg19).Can you recommend me any source/link? Thanks a lot! ...
encode rna-seq written 22 months ago by justa.dk0 • updated 22 months ago by Alex Reynolds29k
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Comment: C: miRDeep2.0.0.8 install error occured
... And since then (after this touch install_successful) mirdeep works? How was the performance on your dataset? ...
written 3.4 years ago by justa.dk0
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Comment: A: RNAfold installation error
... Thank you for the reply, Pierre! My g++ version : 4.8.4 So far, i can't find any info what version Vienna requires. What would be your suggestion? ...
written 3.4 years ago by justa.dk0
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RNAfold installation error
... Hey guys, I've been trying to install RNAfold, however without any success. I've tried to follow the instructions t ar xvvzf ViennaRNA-1.8.4.tar.gz cd to the Vienna dir type ./configure --prefix=your_path_to_Vienna/install_dir make make install However the last two steps ...
rnafold written 3.5 years ago by justa.dk0 • updated 21 months ago by zhengchenfei60

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