User: Purpleone

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Purpleone80
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Posts by Purpleone

<prev • 3 results • page 1 of 1 • next >
6
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Complete Snp Gsea Solution?
... I'm looking for a tool/webserver/galaxy-workflow that can do the following steps: 1) Take a bunch of SNPs in the form of RS IDs 2) Map the SNPs to nearby genes, based on some tunable criteria (distance) 3) Perform GSEA on these genes to find enriched pathways/sets It would be extra nice if this ...
enrichment annotation snp written 17 months ago by Purpleone80 • updated 17 months ago by Larry_Parnell15k
3
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1
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587
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1
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Estimating Variance Explained By Snps
... What is a standard approach to estimating the (phenotypic) variance explained by SNPs in a case/control GWAS? I know about GCTA, but it's very computationally intensive. Are there simpler methods? ...
snp written 2.1 years ago by Purpleone80 • updated 2.1 years ago by Philipp1.4k
11
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3
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6 follow
3
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Fast Eqtl Analysis Tool
... I've got about 2M imputed SNPs and 35K gene expression probesets, and I'd like to identify all eQTL. Running this under PLINK --linear is going to take a very long time, are there any specialized tools out there to handle this sort of data? ...
eqtl plink gene written 2.5 years ago by Purpleone80 • updated 2.5 years ago by brentp17k

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