User: Purpleone

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Purpleone80
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80
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Location:
Australia
Last seen:
10 months ago
Joined:
3 years, 8 months ago
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Posts by Purpleone

<prev • 4 results • page 1 of 1 • next >
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Autosomal SNPs tagging sex chromosomes?
... Hi, I've got some human GWAS data and looking at rs7329280 (chr13), which seems to be highly associated with the sex. This doesn't make much sense to me, it's an autosomal SNPs and on UCSC browser there's not much annotated in that region (besides the gene itself, TPTE2). Is it likely that this SN ...
sequence snp ld written 10 months ago by Purpleone80
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Complete Snp Gsea Solution?
... I'm looking for a tool/webserver/galaxy-workflow that can do the following steps: 1) Take a bunch of SNPs in the form of RS IDs 2) Map the SNPs to nearby genes, based on some tunable criteria (distance) 3) Perform GSEA on these genes to find enriched pathways/sets It would be extra nice if this ...
enrichment snp annotation written 2.7 years ago by Purpleone80 • updated 2.7 years ago by Larry_Parnell15k
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Estimating Variance Explained By Snps
... What is a standard approach to estimating the (phenotypic) variance explained by SNPs in a case/control GWAS? I know about GCTA, but it's very computationally intensive. Are there simpler methods? ...
snp written 3.3 years ago by Purpleone80 • updated 3.3 years ago by Philipp2.2k
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Fast Eqtl Analysis Tool
... I've got about 2M imputed SNPs and 35K gene expression probesets, and I'd like to identify all eQTL. Running this under PLINK --linear is going to take a very long time, are there any specialized tools out there to handle this sort of data? ...
gene eqtl plink written 3.7 years ago by Purpleone80 • updated 6 months ago by lkmklsmn420

Latest awards to Purpleone

Student 2.5 years ago, asked a question with at least 3 up-votes. For Estimating Variance Explained By Snps
Student 2.5 years ago, asked a question with at least 3 up-votes. For Fast Eqtl Analysis Tool

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