User: roonymoonlight
roonymoonlight • 40
- Reputation:
- 40
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- Last seen:
- 3 years, 11 months ago
- Joined:
- 4 years, 7 months ago
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Posts by roonymoonlight
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... Hi, I have just completed my master degree in Bioinformatics. I still have no experience in DNA sequencing work in wet lab. I got a job to do with capillary sequencing in a hospital. In the analysis of the data. I must find a mutation in the patients samples. Any suggested software? what is the c ...
written 4.0 years ago by
roonymoonlight • 40
• updated
4.0 years ago by
Michael Dondrup ♦ 48k
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... Thank you very much ...
written 4.3 years ago by
roonymoonlight • 40
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... Hi , Iam working on GPR146 , which an orphan receptor and My project is to do phylogenetic analysis for this protein to give insight into the relationship and the pharmacological proprieties of rhodopsin like GPCRs . The idea is to find the conserved regions of this type of GPCR and it can help to ...
written 4.3 years ago by
roonymoonlight • 40
• updated
4.3 years ago by
GenoMax ♦ 96k
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... Hi
I am generating a high quality model by homology modeling method. But I am looking at alignment from different software ,
alignment between my target sequences from blast and other alignmet from HHpred.
saw I want to compare the quality of the two alignment , any suggestion how can I do that ...
written 4.4 years ago by
roonymoonlight • 40
• updated
4.4 years ago by
GenoMax ♦ 96k
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... Hi,
I am trying to generate a high quality model for GPR146 by homology modelling method ( I will use modeller) .As you know a good alignment is a very important step to get a good model. I did search for a template by BLAST, and also I used HHpred prgram. Because the strategy of my project is n ...
written 4.4 years ago by
roonymoonlight • 40
• updated
4.4 years ago by
GenoMax ♦ 96k
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... Thank you very much,
How about these programs below:
Phylip http://evolution.genetics.washington.edu/phylip
PAUP* http://paup.csit.fsu.edu/about.
MrBayes the package for Bayesian trees
MEGA http://www.megasoftware.net/
I am a beginner and I need an advice, which program is the best ? an ...
written 4.4 years ago by
roonymoonlight • 40
5
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... Hi,
I am trying to generate the best possible structure for an orphan [GPCR][1] by homology modelling. I have the sequence and BLAST results. I want to choose a template based on phylogenetic analysis. What phylogenetic software should I use? Does anyone know any resources I can use to guide me?
...
written 4.5 years ago by
roonymoonlight • 40
• updated
4.5 years ago by
jhc • 2.9k
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Answer:
A: Blast E Value Calculation
... E=pN where p is the p-value and N is the total length of the database divided by the length of the aligned database sequence ...
written 4.5 years ago by
roonymoonlight • 40
5
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... Hi, I am trying to install shiny packages from my R console using the command install packages ("shiny") but i got this error, what it means? how can I install shiny from R ? ...
written 4.6 years ago by
roonymoonlight • 40
• updated
4.6 years ago by
GenoMax ♦ 96k
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... Ian working on RNA-seq data project, i have to build an interface that implement a method for graphical visualisation of the mapped data , by presenting it in a standalone data viewer (e.g. IGV). I am a beginner in this staff, but i know that i can use PHP, i need any suggestions how to implemen ...
written 4.6 years ago by
roonymoonlight • 40
• updated
4.6 years ago by
Ram ♦ 32k
Latest awards to roonymoonlight
Student
4.5 years ago,
asked a question with at least 3 up-votes.
For How do I use phylogenetic analysis of BLAST search results to choose the best template for homology modelling?
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