User: roonymoonlight

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Posts by roonymoonlight

<prev • 15 results • page 1 of 2 • next >
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witch software is used to finde a mutation in the DNA sequencsing data. And what the criterai of the computer I need?
... Hi, I have just completed my master degree in Bioinformatics. I still have no experience in DNA sequencing work in wet lab. I got a job to do with capillary sequencing in a hospital. In the analysis of the data. I must find a mutation in the patients samples. Any suggested software? what is the c ...
sanger sequencing written 2.1 years ago by roonymoonlight40 • updated 2.1 years ago by Michael Dondrup45k
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Comment: C: How to find a conserved regions for a protein by phylogentic analysis tree
... Thank you very much ...
written 2.3 years ago by roonymoonlight40
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How to find a conserved regions for a protein by phylogentic analysis tree
... Hi , Iam working on GPR146 , which an orphan receptor and My project is to do phylogenetic analysis for this protein to give insight into the relationship and the pharmacological proprieties of rhodopsin like GPCRs . The idea is to find the conserved regions of this type of GPCR and it can help to ...
phylogentics written 2.4 years ago by roonymoonlight40 • updated 2.4 years ago by genomax64k
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How to compare the alignment quality of two or more homology modelling software
... Hi I am generating a high quality model by homology modeling method. But I am looking at alignment from different software , alignment between my target sequences from blast and other alignmet from HHpred. saw I want to compare the quality of the two alignment , any suggestion how can I do that ...
alignment written 2.4 years ago by roonymoonlight40 • updated 2.4 years ago by genomax64k
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What is the differenc between the alignment generated by HHpred and the one generated by BLAST?nd how the comparsion between them is useful for generating a high quality model
... Hi, I am trying to generate a high quality model for GPR146 by homology modelling method ( I will use modeller) .As you know a good alignment is a very important step to get a good model. I did search for a template by BLAST, and also I used HHpred prgram. Because the strategy of my project is n ...
homology modelling written 2.4 years ago by roonymoonlight40 • updated 2.4 years ago by genomax64k
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Comment: C: How do I use phylogenetic analysis of BLAST search results to choose the best te
... Thank you very much, How about these programs below: Phylip http://evolution.genetics.washington.edu/phylip PAUP* http://paup.csit.fsu.edu/about. MrBayes the package for Bayesian trees MEGA http://www.megasoftware.net/ I am a beginner and I need an advice, which program is the best ? an ...
written 2.5 years ago by roonymoonlight40
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How do I use phylogenetic analysis of BLAST search results to choose the best template for homology modelling?
... Hi, I am trying to generate the best possible structure for an orphan [GPCR][1] by homology modelling. I have the sequence and BLAST results. I want to choose a template based on phylogenetic analysis. What phylogenetic software should I use? Does anyone know any resources I can use to guide me? ...
protein structure phylogeny homology modelling written 2.5 years ago by roonymoonlight40 • updated 2.5 years ago by jhc2.8k
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Answer: A: Blast E Value Calculation
... E=pN where p is the p-value and N is the total length of the database divided by the length of the aligned database sequence ...
written 2.6 years ago by roonymoonlight40
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In shiny installation ,what this error mean Warning in (install.packages : 'lib = "/usr/local/lib/R/site-library"' is not writable Would you like to use a personal library instead? (y/n).
... Hi, I am trying to install shiny packages from my R console using the command install packages ("shiny") but i got this error, what it means? how can I install shiny from R ? ...
shiny written 2.7 years ago by roonymoonlight40 • updated 2.7 years ago by genomax64k
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(Closed) Iam working on RNA-seq data project, i have to build an interface that implement a method for graphical visualisation of the mapped data , by presenting it in a standalone data viewer (e.g. IGV)
... Ian working on RNA-seq data project, i have to build an interface that implement a method for graphical visualisation of the mapped data , by presenting it in a standalone data viewer (e.g. IGV). I am a beginner in this staff, but i know that i can use PHP, i need any suggestions how to implemen ...
visulization of rna-seq data written 2.7 years ago by roonymoonlight40 • updated 2.7 years ago by RamRS20k

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