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0
votes
2
replies
768
views
Comment:
Comment: What is the sequence origin in human plasma?
4 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
225
views
Comment:
Comment: PCA script correction
5 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
450
views
Comment:
Comment: Searching for gene in multiple genomes
5 days ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
768
views
Comment:
Comment: What is the sequence origin in human plasma?
5 days ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
450
views
Answer:
Answer: Searching for gene in multiple genomes
5 days ago by
BioinfGuru
★ 1.6k
1
vote
1
reply
621
views
Answer:
Answer: cutadapt not trimming all adapters in PE Illumina sequencing
7 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
209
views
Answer:
Answer: How to find and visualize expression level of a dataset?
7 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
439
views
Comment:
Comment: RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditi
10 days ago by
BioinfGuru
★ 1.6k
1
vote
2
replies
439
views
RNA-seq differential expression across multiple tissues, 2 trials, and 2 conditions
RNA-seq
DESeq
EdgeR
Batch-effect
DEGs
10 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
243
views
Comment:
Comment: What GC content should I expect?
11 days ago by
BioinfGuru
★ 1.6k
1
vote
2
replies
243
views
What GC content should I expect?
RNA-seq
GC-content
updated 11 days ago by
ATpoint
81k • written 11 days ago by
BioinfGuru
★ 1.6k
1
vote
0
replies
300
views
Comment:
Comment: How do I collapse rows of a tibble in R?
17 days ago by
BioinfGuru
★ 1.6k
3
votes
2
replies
300
views
How do I collapse rows of a tibble in R?
R
tidyverse
tibble
collapse
17 days ago by
BioinfGuru
★ 1.6k
3
votes
2
replies
571
views
RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or 'exon'
featureCounts
NCBI
Ensembl
GFF
rnaseq
updated 25 days ago by
Gordon Smyth
★ 6.9k • written 5 weeks ago by
BioinfGuru
★ 1.6k
2
votes
0
replies
571
views
Answer:
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
25 days ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
864
views
Comment:
Comment: How to download multiple .gz files from Ensembl Protists database
5 weeks ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
6.7k
views
Comment:
Comment: How to get the chromosome numbers from RefSeq accession IDs?
5 weeks ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
265
views
Comment:
Comment: RNA-Seq | DESeq2 | differentially expressed genes | Dispersion
6 weeks ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
13k
views
Answer:
Answer: ERROR: failed to find the gene identifier attribute in the 9th column of the pro
25 days ago by
BioinfGuru
★ 1.6k
3
votes
2
replies
2.4k
views
From cuffmerge to cuffdiff: What input for cuffdiff?
rna-seq
cuffmerge
cuffdiff
treated
controls
updated 3.5 years ago by
Biostar
20 • written 7.7 years ago by
BioinfGuru
★ 1.6k
3
votes
7
replies
2.3k
views
Tissue Specificity R-package
tissue specificity
R package
pipeline
publication
updated 4.7 years ago by
Biostar
20 • written 6.1 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
19k
views
Answer:
A: Checking fastq is valid
updated 4.8 years ago by
Ram
43k • written 7.2 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
5.6k
views
Comment:
C: Quantile normalisation: raw rpkm or log2rpkm?
updated 5.1 years ago by
Ram
43k • written 7.5 years ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
1.3k
views
Comment:
C: Can i use ucsc track browser without a reference organism?
5.5 years ago by
BioinfGuru
★ 1.6k
1
vote
1
reply
1.3k
views
Comment:
C: Can i use ucsc track browser without a reference organism?
5.5 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
6.8k
views
Comment:
C: mitochondrial blacklists ATAC-Seq
updated 5.5 years ago by
Ram
43k • written 7.1 years ago by
BioinfGuru
★ 1.6k
1
vote
1
reply
6.8k
views
Answer:
A: mitochondrial blacklists ATAC-Seq
updated 5.5 years ago by
Ram
43k • written 7.1 years ago by
BioinfGuru
★ 1.6k
1
vote
1
reply
4.7k
views
Comment:
C: Confused about merging RNA-seq lanes/runs
5.8 years ago by
BioinfGuru
★ 1.6k
8
votes
3
replies
4.7k
views
Confused about merging RNA-seq lanes/runs
Merge
RNA-seq
samples
runs
lanes
updated 5.8 years ago by
GenoMax
140k • written 5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
2
replies
4.7k
views
Comment:
C: Can we concatenate two fastq files from same sample but different runs
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
6.5k
views
Answer:
C: Picard MarkDuplicates flag vs remove issue
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
6.5k
views
Comment:
C: Picard MarkDuplicates flag vs remove issue
5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.8 years ago by
BioinfGuru
★ 1.6k
9
votes
7
replies
1.9k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
0
replies
2.1k
views
Comment:
C: Low mapping percentage after mapping RNA-seq reads to a closely related species
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
1.6k
views
Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
SNP
GATK
pipeline
variant analysis
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
2.4k
views
Comment:
C: HaplotypeCaller output - All records are non-variant - Have I gone wrong somwher
5.8 years ago by
BioinfGuru
★ 1.6k
2
votes
2
replies
2.4k
views
HaplotypeCaller output - All records are non-variant - Have I gone wrong somewhere?
SNP
haplotypecaller
NON_REF
gatk
5.8 years ago by
BioinfGuru
★ 1.6k
2
votes
1
reply
12k
views
Comment:
C: How to select an aligner?
5.8 years ago by
BioinfGuru
★ 1.6k
4
votes
1
reply
12k
views
Answer:
A: How to select an aligner?
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
3.0k
views
Comment:
C: Parsing Blast output on linux/unix
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
2.7k
views
Comment:
C: GATK SNPs calling multiple sample without any known SNPs database
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
1
reply
2.7k
views
Answer:
A: GATK SNPs calling multiple sample without any known SNPs database
5.8 years ago by
BioinfGuru
★ 1.6k
0
votes
0
replies
1.4k
views
Answer:
A: Are there needs to perform imputation for genotype generated from WGS ?
5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
0
replies
1.4k
views
Answer:
A: Protein Prediction Software - Any Recommendations? (template based vs non-templa
5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
0
replies
2.8k
views
Answer:
A: removing batch effects from large number of data sets
5.8 years ago by
BioinfGuru
★ 1.6k
2
votes
1
reply
1.9k
views
Comment:
C: location of mutations
5.8 years ago by
BioinfGuru
★ 1.6k
1
vote
1
reply
1.9k
views
Answer:
A: location of mutations
5.8 years ago by
BioinfGuru
★ 1.6k
384 results • Page
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