User: Chami

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Chami0
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7 years, 2 months ago
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7 years, 8 months ago
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Posts by Chami

<prev • 5 results • page 1 of 1 • next >
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Marmoset Mrna Details Via Ucsc Mysql Database
... I currently access the UCSC 'refFlat' table to extract human mRNA details namely ; mRNA name, Start coordinate and End coordinate. I want the same information regarding the Marmoset mRNAs. My primary need is to BLAST a sequence segment , get its coordinate and see whether a mRNA is present in the ...
mrna written 7.5 years ago by Chami0 • updated 20 months ago by Biostar ♦♦ 20
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Comment: C: Genscan Server Query Through Java
... Thanks work like charm ! ...
written 7.7 years ago by Chami0
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Genscan Server Query Through Java
... Hi , I am trying to access the GenScan server @ MIT to get gene predictions automated through java. Here is the code I managed to come up with. ( lot of it is cut & paste and me modifying ) public class POST_GenScan { /** * @param args the command line arguments */ public static void getDATA ...
java written 7.7 years ago by Chami0 • updated 7.7 years ago by Fred720
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Comment: C: What Is Represented By Tname In Psl Format
... Thanks for your answer. I did go through this resource. But my question was in the BLAT results on my query I get this 'number' 63025520 instead of something like 'Homo sapiens small nucleolar RNA host gene 11 (non-protein coding) (SNHG11), non-coding RNA.' Can I derive at the description from that ...
written 7.7 years ago by Chami0
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What Is Represented By Tname In Psl Format
... I am writing a Java program to fetch a short DNA sequence from a file and run a BLAT query on that. The results I get are in PSL format. The aim of the exercise is to see where the sequence maps to. Not just the chromosome, strand, start and end coordinates, but when available mRNA/Exon/Intron etc ...
blat written 7.7 years ago by Chami0 • updated 7.7 years ago by Casey Bergman18k

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Autobiographer 7.2 years ago, has more than 80 characters in the information field of the user's profile.

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