User: Kelsey Tyssowski
Kelsey Tyssowski • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Harvard Medical School
- Last seen:
- 2 years, 1 month ago
- Joined:
- 2 years, 8 months ago
- Email:
- t********@fas.harvard.edu
Posts by Kelsey Tyssowski
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... Hi! I am trying to determine the correct way to propagate my error.
I have a matrix (m) of expression values, and I am dividing the whole matrix by the first n=column(m/m[,1]). Then I am plotting the column means of my new matrix (n)--i.e. one point for each column.
I want to make sure I use the c ...
written 2.1 years ago by
Kelsey Tyssowski • 10
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Comment:
C: Targeted RNAseq Analysis
... Sorry about that! I posted here first and then someone told me about the bioconductor forum and recommended I post there with more info. I'll try not to do that in the future! ...
written 2.5 years ago by
Kelsey Tyssowski • 10
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... I am using EdgeR to find DE genes in my data. However, my data is a bit unusual because, in order to reduce necessary sequencing depth, I have been enriching my sequencing libraries for 300 genes of interest before sequencing and then running EdgeR DE analysis on only those genes. Of the 300 genes, ...
written 2.5 years ago by
Kelsey Tyssowski • 10
• updated
2.5 years ago by
Devon Ryan ♦ 88k
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... I have ChIP-seq data for several time points after a stimulus, but it seems like my samples have differences in signal-to-noise ratio. i.e. some samples have a more background reads relative to reads in peaks than others, likely due to technical variation. Is there a standard way to normalize for th ...
written 2.7 years ago by
Kelsey Tyssowski • 10
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