User: uxue33
uxue33 • 20
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PhD candidate in bioinformatic at IMIM
Posts by uxue33
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... I'm trying to run quality control on the Illumina 450K methylation chip data with the meffil package.
I create the Sample sheet using the following command:
samplesheet <- meffil.create.samplesheet("/path/to/idat/files/", recursive=TRUE)
I add sex and personal id columns and load again ...
written 16 months ago by
uxue33 • 20
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... Thank you so much for your help! ...
written 3.0 years ago by
uxue33 • 20
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... Thanks a lot for this work!
How have you done it? Is there anywhere I can download it?
Thanks again! ...
written 3.0 years ago by
uxue33 • 20
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... What I'm looking is to pair for example Homo sapiens with hg38 (which is the UCSC Genome Browser assembly ID), I don't need any information about the genome itself.
Thank you for your answers! ...
written 3.0 years ago by
uxue33 • 20
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... Thank you for your answer but I still can not guess how to obtain a list with the species name and the corresponding UCSC Genome Browser assembly ID. ...
written 3.0 years ago by
uxue33 • 20
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... Hello all,
I'm beginning to work with data bases form my Master Thesis.
I want to map each organism name with the corresponding UCSC Genome Browser assembly ID to save it in a table. As I don't have the UCSC database available to work with MySQL my question is if there is any way to get all the UC ...
written 3.0 years ago by
uxue33 • 20
• updated
3.0 years ago by
genecats.ucsc • 570
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... Than you a lot for your code! ...
written 4.2 years ago by
uxue33 • 20
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... Thank you a lot for your help! ...
written 4.2 years ago by
uxue33 • 20
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... Thank you for the link! ...
written 4.2 years ago by
uxue33 • 20
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5 follow
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... Hello all,
I'm beginning to learn Python 2.7 and need to develop some applications for a lab project.
I want to run an external program and then use its output as input for another external call in the same script. The issue is that the script tries to call the second program even before the first ...
written 4.2 years ago by
uxue33 • 20
• updated
4.2 years ago by
WouterDeCoster ♦ 45k
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