User: uxue33

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uxue3320
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Last seen:
11 months, 1 week ago
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4 years, 2 months ago
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PhD candidate in bioinformatic at IMIM

Posts by uxue33

<prev • 20 results • page 1 of 2 • next >
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Illumina 450K quality controls with meffil
... I'm trying to run quality control on the Illumina 450K methylation chip data with the meffil package. I create the Sample sheet using the following command: samplesheet <- meffil.create.samplesheet("/path/to/idat/files/", recursive=TRUE) I add sex and personal id columns and load again ...
ewas snp meffil written 11 months ago by uxue3320
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Comment: C: Get UCSC Genome Browser assembly ID
... Thank you so much for your help! ...
written 2.5 years ago by uxue3320
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Comment: C: Get UCSC Genome Browser assembly ID
... Thanks a lot for this work! How have you done it? Is there anywhere I can download it? Thanks again! ...
written 2.5 years ago by uxue3320
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Comment: C: Get UCSC Genome Browser assembly ID
... What I'm looking is to pair for example Homo sapiens with hg38 (which is the UCSC Genome Browser assembly ID), I don't need any information about the genome itself. Thank you for your answers! ...
written 2.5 years ago by uxue3320
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Comment: C: Get UCSC Genome Browser assembly ID
... Thank you for your answer but I still can not guess how to obtain a list with the species name and the corresponding UCSC Genome Browser assembly ID. ...
written 2.5 years ago by uxue3320
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Get UCSC Genome Browser assembly ID
... Hello all, I'm beginning to work with data bases form my Master Thesis. I want to map each organism name with the corresponding UCSC Genome Browser assembly ID to save it in a table. As I don't have the UCSC database available to work with MySQL my question is if there is any way to get all the UC ...
assembly written 2.5 years ago by uxue3320 • updated 2.5 years ago by genecats.ucsc580
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Comment: C: Calling Qiime scripts sequencially in Python 2.7 program
... Than you a lot for your code! ...
written 3.8 years ago by uxue3320
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Comment: C: Calling Qiime scripts sequencially in Python 2.7 program
... Thank you a lot for your help! ...
written 3.8 years ago by uxue3320
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Comment: C: Calling Qiime scripts sequencially in Python 2.7 program
... Thank you for the link! ...
written 3.8 years ago by uxue3320
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Calling Qiime scripts sequencially in Python 2.7 program
... Hello all, I'm beginning to learn Python 2.7 and need to develop some applications for a lab project. I want to run an external program and then use its output as input for another external call in the same script. The issue is that the script tries to call the second program even before the first ...
python written 3.8 years ago by uxue3320 • updated 3.8 years ago by WouterDeCoster44k

Latest awards to uxue33

Popular Question 11 months ago, created a question with more than 1,000 views. For Python 2.7 Tk filedialog calling external programs
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Python 2.7 Tk filedialog calling external programs
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Using getopt module to parse and define command line arguments in python
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Execute external program in Tk Python 2.7

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