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questions
0
votes
0
replies
382
views
valid pairs to .hic
HIC
15 months ago by
GK1610
▴ 120
0
votes
1
reply
630
views
Deconvolution blood RNASeq samples
RNASeq
updated 2.5 years ago by
seidel
11k • written 2.5 years ago by
GK1610
▴ 120
0
votes
1
reply
710
views
CTCF sites TAD
3D
genome
updated 2.5 years ago by
GenoMax
148k • written 2.5 years ago by
GK1610
▴ 120
0
votes
3
replies
885
views
highly correlated hidden factors
ATAC-Seq
data
exploration
analysis
updated 2.6 years ago by
Angli Xue
• 0 • written 3.4 years ago by
GK1610
▴ 120
0
votes
0
replies
600
views
Sequence length distribution after adapter trimming using trimmomatic
alignment
3.9 years ago by
GK1610
▴ 120
1
vote
1
reply
873
views
Rat Genome and dbsnp file
genome
4.4 years ago by
GK1610
▴ 120
0
votes
1
reply
650
views
Structural Variants in a VCF file
SNP
4.5 years ago by
GK1610
▴ 120
1
vote
1
reply
1.6k
views
Merge WGS and genotype data
SNP
updated 5.2 years ago by
Biostar
20 • written 5.8 years ago by
GK1610
▴ 120
0
votes
0
replies
837
views
to check allelic biases in histone peaks
SNP
ChIP-Seq
updated 5.5 years ago by
Biostar
20 • written 5.7 years ago by
GK1610
▴ 120
0
votes
0
replies
1.4k
views
QTLtools pca detects no varaints
snp
updated 5.7 years ago by
Biostar
20 • written 5.8 years ago by
GK1610
▴ 120
0
votes
1
reply
1.3k
views
GC content from bam to fasta file
ChIP-Seq
5.8 years ago by
GK1610
▴ 120
1
vote
1
reply
3.0k
views
bcftools concatenation error
SNP
bcftools
updated 5.8 years ago by
swbarnes2
14k • written 5.8 years ago by
GK1610
▴ 120
4
votes
3
replies
1.2k
views
variants filtering with maf>5% every 100kb
SNP
5.8 years ago by
GK1610
▴ 120
2
votes
2
replies
1.6k
views
change the columns of vcf file
SNP
updated 6.2 years ago by
Biostar
20 • written 6.2 years ago by
GK1610
▴ 120
2
votes
1
reply
3.6k
views
bamtools stats output
alignment
sequencing
6.2 years ago by
GK1610
▴ 120
0
votes
0
replies
1.5k
views
liftover not giving same number of columns
snp
genome
6.3 years ago by
GK1610
▴ 120
3
votes
2
replies
5.1k
views
Liftover error from picard
SNP
software error
6.4 years ago by
GK1610
▴ 120
1
vote
1
reply
2.3k
views
Trimming reads of Chipseq samples
ChIP-Seq
alignment
updated 6.5 years ago by
Devon Ryan
104k • written 6.5 years ago by
GK1610
▴ 120
1
vote
1
reply
1.6k
views
GATK UnifiedGenotyper doesn't output the variants in vcf files
snp
updated 6.5 years ago by
Pierre Lindenbaum
164k • written 6.5 years ago by
GK1610
▴ 120
2
votes
3
replies
2.4k
views
combineVariants error for merging two vcf files
snp
gatk
combinevariants
updated 6.6 years ago by
Biostar
20 • written 6.7 years ago by
GK1610
▴ 120
1
vote
2
replies
1.6k
views
verifybamid results with freemix < 2% and chipmix > 10%
SNP
ChIP-Seq
sequencing
updated 6.6 years ago by
WouterDeCoster
47k • written 6.6 years ago by
GK1610
▴ 120
7
votes
5
replies
2.4k
views
Add AF from 1000 genomes vcf file to a different vcf file
SNP
snp
updated 6.6 years ago by
trausch
★ 1.9k • written 6.6 years ago by
GK1610
▴ 120
1
vote
0
replies
2.3k
views
What is chipmix and freemix in verifybamid
SNP
sequencing
6.6 years ago by
GK1610
▴ 120
14
votes
18
replies
7.3k
views
7 follow
How can I save the output from samtools and awk as a bam file?
ChIP-Seq
updated 6.6 years ago by
GenoMax
148k • written 8.4 years ago by
GK1610
▴ 120
3
votes
6
replies
2.8k
views
bcftools to GATK
snp
updated 6.7 years ago by
Pierre Lindenbaum
164k • written 6.7 years ago by
GK1610
▴ 120
0
votes
4
replies
2.8k
views
combine gvcf error
snp
updated 6.7 years ago by
Pierre Lindenbaum
164k • written 6.7 years ago by
GK1610
▴ 120
0
votes
1
reply
2.4k
views
GATK GenotypeGVCFs output is empty gvcf file
SNP
updated 6.7 years ago by
Pierre Lindenbaum
164k • written 6.7 years ago by
GK1610
▴ 120
2
votes
6
replies
2.2k
views
VCF files columns-biological explanation.
SNP
updated 6.7 years ago by
WouterDeCoster
47k • written 6.7 years ago by
GK1610
▴ 120
0
votes
1
reply
2.0k
views
MACS2 peaks filtering
ChIP-Seq
6.8 years ago by
GK1610
▴ 120
1
vote
1
reply
1.8k
views
From bed file to enrichment score
ChIP-Seq
updated 7.2 years ago by
Biostar
20 • written 7.4 years ago by
GK1610
▴ 120
1
vote
3
replies
2.6k
views
ChipSeeker genomic features
ChIP-Seq
updated 7.5 years ago by
Biostar
20 • written 7.7 years ago by
GK1610
▴ 120
1
vote
2
replies
2.9k
views
UCSC browser upload files using dropbox link
ChIP-Seq
8.0 years ago by
GK1610
▴ 120
0
votes
0
replies
1.6k
views
ChIPpeakAnno findoverlappping peaks
ChIP-Seq
8.0 years ago by
GK1610
▴ 120
1
vote
1
reply
2.4k
views
ChipSeeker error in enrichPathway and seq2gene
ChIP-Seq
updated 8.0 years ago by
Biostar
20 • written 8.1 years ago by
GK1610
▴ 120
4
votes
4
replies
3.4k
views
Find Fragment Size of a bamfilee
ChIP-Seq
updated 8.2 years ago by
apnri
▴ 40 • written 8.2 years ago by
GK1610
▴ 120
1
vote
3
replies
5.0k
views
MACS2 Nomodel doesnt take the fragment size
ChIP-Seq
8.2 years ago by
GK1610
▴ 120
1
vote
3
replies
3.8k
views
How can I increase the number of peaks using macs2 peak caller?
ChIP-Seq
8.4 years ago by
GK1610
▴ 120
1
vote
3
replies
3.8k
views
How to remove duplicates in a sorted bam file using picard?
ChIP-Seq
8.4 years ago by
GK1610
▴ 120
0
votes
4
replies
5.4k
views
randomly subsampling a bam file three times
ChIP-Seq
updated 8.4 years ago by
karl.stamm
4.1k • written 8.4 years ago by
GK1610
▴ 120
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