User: Nick H

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Nick H40
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7 years, 5 months ago
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7 years, 11 months ago
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Posts by Nick H

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Answer: A: Understanding Vcf File Format
... AD = Allelic Depth, which is the number of reads that have the reference vs non reference base. In this case 19 ref, 17 alternate. These two values will usually, but not always sum to the DP value. Reads that are not used for calling are not counted in the DP measure, but are included in AD. ...
written 7.5 years ago by Nick H40
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Comment: C: Pre-Processing Microarray
... True- will amend answer to make that clear. ...
written 7.5 years ago by Nick H40
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Answer: A: Pre-Processing Microarray
... Depends on your platform, but for Illumina bead array data, a complete analysis pipeline might look something like: ID SPATIAL ARTIFACTS and IMAGE PLOTS BASH OUTLIER & DEFECT ANALYSIS BACKGROUND CORRECT DATA AND QA/QC SUMMARIZE BEAD LEVEL DATA INTO BEAD SUMMARY DATA NORMALIZE ANALYSIS Howeve ...
written 7.5 years ago by Nick H40
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Answer: A: Any R / Bioconductor Package To Analyse Iscan Snp Genotyping Data
... Hi, The beadarray package now contains a function called processSwathData(), which should transform this data into a format beadarray can handle. Do you have one text file per sample? Or just the .tif images? You will need files such as _perBeadfile.txt to use this. I am unsure if you can read bead ...
written 7.9 years ago by Nick H40

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